Arabidopsis thaliana (thale cress): AT5G27740
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Entry
AT5G27740 CDS
T00041
Symbol
EMB2775
Name
(RefSeq) ATPase family associated with various cellular activities (AAA)
KO
K10756
replication factor C subunit 3/5
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03030
DNA replication
ath03410
Base excision repair
ath03420
Nucleotide excision repair
ath03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AT5G27740 (EMB2775)
03410 Base excision repair
AT5G27740 (EMB2775)
03420 Nucleotide excision repair
AT5G27740 (EMB2775)
03430 Mismatch repair
AT5G27740 (EMB2775)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ath03032
]
AT5G27740 (EMB2775)
03036 Chromosome and associated proteins [BR:
ath03036
]
AT5G27740 (EMB2775)
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT5G27740 (EMB2775)
DNA replication proteins [BR:
ath03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
AT5G27740 (EMB2775)
DNA Replication Termination Factors
ELG1-RFC complex
AT5G27740 (EMB2775)
Chromosome and associated proteins [BR:
ath03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
AT5G27740 (EMB2775)
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
AT5G27740 (EMB2775)
Check point factors
HRAD17(Rad24)-RFC complex
AT5G27740 (EMB2775)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
DNA_pol3_delta2
RCF1-5-like_lid
AAA
Rad17
Sigma54_activ_2
AAA_22
AAA_5
RsgA_GTPase
RuvB_N
ABC_tran
AAA_29
Mg_chelatase
AAA_23
DUF815
AAA_16
AAA_24
AAA_2
T2SSE
ATPase_2
nSTAND3
TsaE
nSTAND1
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
832836
NCBI-ProteinID:
NP_198126
TAIR:
AT5G27740
UniProt:
Q8VXX4
A0A654G4M8
LinkDB
All DBs
Position
5:9823513..9827243
Genome browser
AA seq
354 aa
AA seq
DB search
MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG
ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR
CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY
PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE
LLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgggtcgacaagtacaggccgaaatcactcgacaaggtcatagttcatgaagat
atcgcccaaaaactcaagaaattggtttccgagcaagattgtccacatttgctcttttat
gggccgtcaggttctggtaagaaaaccctaattatggctcttctcaagcagatatatggg
gccagtgcagagaaggtgaaagtggagaacagggcatggaaagttgatgctgggagtaga
actattgatctggagctcactacattatcaagcaccaatcatgtggaacttactccaagt
gatgcaggctttcaggacagatatattgttcaggagataattaaagaaatggccaagaac
agaccaattgacacgaaaggaaagaagggatataaggtgttggtattaaatgaggttgac
aagctctcacgagaagctcaacattctctgcggagaacaatggagaaatacagctcatct
tgccgtctcatcttatgctgcaacagctcttcgaaggttaccgaagccattaagtctcgt
tgtctcaatgtgcgcataaatgcaccttcgcaggaagagatagtgaaagtgttggagttc
gttgcaaagaaagaaagtctgcaactgccccagggttttgctgctcgtattgctgaaaaa
tcaaatcgcagtctaagaagagctattttgtcacttgaaacttgtcgtgtccaaaactat
ccgttcacaggtaaccaagtgatatctcccatggattgggaagagtatgttgctgaaata
gcaactgacatgatgaaagaacaaagccctaaaaagttatttcaggtgcgtggaaaggtg
tacgaattactagttaattgtattccaccagaagtcattctaaagagactccttcatgaa
ttgctgaagaaactggactcagagctaaagcttgaagtctgccactgggctgcatattat
gaacatcggatgcgattaggtcagaaagccatatttcacatagaagcatttgtggccaag
tttatgagcatatacaaaaacttcctcatttcaacgtttgggtag
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