Arabidopsis thaliana (thale cress): AT5G28740
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Entry
AT5G28740 CDS
T00041
Name
(RefSeq) Tetratricopeptide repeat (TPR)-like superfamily protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT5G28740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G28740
03041 Spliceosome [BR:
ath03041
]
AT5G28740
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
AT5G28740
Spliceosome [BR:
ath03041
]
Complex B
Other components
Prp19-related factors
AT5G28740
Complex C
AT5G28740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_5
Motif
Other DBs
NCBI-GeneID:
832986
NCBI-ProteinID:
NP_198226
TAIR:
AT5G28740
UniProt:
Q9LKU3
A0A178ULT4
LinkDB
All DBs
Position
5:10780503..10783996
Genome browser
AA seq
917 aa
AA seq
DB search
MAISKDLYPSQEDLLYEEELLRNQFSLKLWWRYLIAKAESPFKKRFIIYERALKALPGSY
KLWYAYLRERLDIVRNLPVTHPQYDSLNNTFERGLVTMHKMPRIWVMYLQTLTVQQLITR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQNGIPIETSLRVYRRYLMYDPSHIEEFIEFL
VKSERWQESAERLASVLNDDKFYSIKGKTKHKLWLELCELLVHHANVISGLNVDAIIRGG
IRKFTDEVGMLWTSLADYYIRKNLLEKARDIYEEGMMKVVTVRDFSVIFDVYSRFEESTV
AKKMEMMSSSDEEDENEENGVEDDEEDVRLNFNLSVKELQRKILNGFWLNDDNDVDLRLA
RLEELMNRRPALANSVLLRQNPHNVEQWHRRVKIFEGNAAKQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGA
LELMRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRAVYEK
ILDLRIATPQIIMNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVKRYG
KTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEEATKKVPEGQKL
EMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCIKFAELERSLGEIDRARALY
KYSSQFADPRSDPEFWNKWHEFEVQHGNEDTYREMLRIKRSVSASYSQTHFILPENMMQK
DKLLDVEDAKGELKRAGLPEDEMAALERQLLSTTTPTEPAKDGGRRVGFVSAGVISQSGE
NEGKPVTGNGEDIELPDESDDESDGDDHVEISQKEVPAAVFGGLARKRDEDGEEAGEDGA
AQKLGALERIKRQKLNQ
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggcgatttccaaagatctctatccttctcaagaggatctactctatgaggaagagctt
cttcgaaaccaattcagcttaaagctatggtggagatacctaatcgcaaaagctgaatct
ccttttaagaaacgcttcatcatctacgagagagctttaaaagcacttcctggaagctat
aaactgtggtacgcttatcttagagaacgactcgatatcgttaggaatttgcctgttact
catccacagtacgattctctcaacaatacttttgagagaggtcttgttactatgcataag
atgcctaggatttgggttatgtatcttcagactcttacggttcagcaattgattactcgg
actcggcgaactttcgaccgtgcgctttgtgctttacctgttactcaacatgataggatt
tgggaaccgtatcttgtgtttgtgagtcaaaatgggattcctattgagacttcacttagg
gtttatagaaggtatcttatgtatgatcctagtcatattgaggagtttattgagtttctt
gtcaagtctgagcgttggcaagaatctgcagagagattagcttctgtgttgaatgatgat
aagttttattctattaaagggaagactaagcataaactgtggttggagttgtgtgagctt
cttgtgcatcatgctaatgtgatttcgggtcttaatgttgatgctattataagaggaggt
attaggaagtttacggatgaagttggaatgctgtggacttctcttgcggattattacatt
aggaagaatttgttggagaaagctagggatatttatgaggagggtatgatgaaggtagta
actgtaagggattttagtgtgatatttgacgtttattcacggttcgaggagagtacggtc
gcgaagaagatggagatgatgagttcaagtgatgaagaagatgagaatgaagagaatggc
gtagaggatgatgaagaggatgttcgccttaattttaatctgtcggtgaaagagttgcag
aggaagatactgaatgggttttggttgaatgatgataatgatgttgatctgagattggct
cgtttggaagaactgatgaacagaagacctgcactggcaaacagtgtgctccttaggcag
aatcctcacaatgttgagcaatggcatcgtagagtcaaaatatttgagggaaacgcagca
aagcagattctcacatacacagaagcagtgaggactgttgatcctatgaaagcagttggg
aagcctcacaccttgtgggttgcttttgccaagttgtatgaaaaccacaaagacctggtc
aatactagagtgatttttgacaaagcagtccaggtaaactacaaaaccgtagatcatctc
gccagtgtgtggtgtgagtgggctgagatggagctgagacacaagaatttcaaaggagca
ttagagctgatgaggcgtgctacagctgtaccgacagtagaagtcagacggagagttgct
gctgatggcaatgaaccagtccagatgaagctgcatagatccttgaggctttggtccttt
tatgttgatctggaagaaagtctggggacgttagaatcgacaagagctgtctatgagaaa
atattggatttgagaatagctacacctcaaattataatgaattatgcttttcttcttgag
gaaaataagtactttgaagatgcgttcaaggtgtatgaaagaggtgtcaagatattcaag
tatcctcatgtgaaagacatttgggtaacctatcttacaaagtttgtcaagagatacggg
aagacaaagctggagcgggcaagagagttgtttgagcatgctgtttcaatggccccatct
gatgctgtcaggacgttataccttcagtatgctaagctagaagaggattatggtctggct
aaacgagccatgaaggtttatgaggaagccaccaaaaaagttccagaaggtcagaagctt
gagatgtacgagatatacatttcccgagcagcggagatatttggtgttcccagaacaagg
gaaatatatgaacaagcaattgaatctgggcttccacataaggatgtgaagatcatgtgc
ataaaatttgctgagctggagagaagcttgggagagattgatcgtgctcgtgcactctat
aagtattcctcccagtttgcagatccaaggtccgaccctgaattctggaacaaatggcat
gagttcgaggtccagcacgggaacgaagatacctacagagaaatgctccgtatcaagcga
agtgtttccgcaagctatagtcagactcatttcattctaccagagaacatgatgcaaaag
gacaagctgcttgatgtggaagacgcaaaaggcgagctgaagagagccggtttacctgaa
gacgaaatggcggctctggagaggcagcttttgtctacaactacccccacagagccagca
aaagatggcgggagaagagttgggtttgtaagcgcaggagtcatctcacagtccggtgag
aatgaggggaaaccagtgacagggaatggagaagacatcgagcttcccgatgaaagtgat
gatgagtctgatggagatgaccatgtggagatctctcagaaagaagtccctgccgctgtt
tttggaggacttgctagaaagagagacgaagacggcgaagaagctggagaagacggtgct
gcccagaaattgggtgcacttgagaggatcaagagacagaagcttaatcagtga
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