Arabidopsis thaliana (thale cress): AT5G28900
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Entry
AT5G28900 CDS
T00041
Name
(RefSeq) Calcium-binding EF-hand family protein
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AT5G28900
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ath01009
]
AT5G28900
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G28900
03036 Chromosome and associated proteins [BR:
ath03036
]
AT5G28900
Protein phosphatases and associated proteins [BR:
ath01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
AT5G28900
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
AT5G28900
Chromosome and associated proteins [BR:
ath03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
AT5G28900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_5
P2R3B_EF-hand
DUF4187
Motif
Other DBs
NCBI-GeneID:
833013
NCBI-ProteinID:
NP_198242
TAIR:
AT5G28900
UniProt:
Q8VZQ4
LinkDB
All DBs
Position
5:10925635..10930462
Genome browser
AA seq
536 aa
AA seq
DB search
MVDTVIPGDMACLDADLLQLQEMSSFVLNSKPGFTQKLFDQWLSLPEAQRQVGSLLKDAV
AGAPINVTGSASGSNSATIPSMFPAGSAPPLSPRSCGSPRTTKQRAPSNLGSTLKVVNEP
VKEPIPQFYFQNGRPPPSEIKEQCMFRINHFFYGHMDGLQIQEFKLVTREICKLPSFFST
SLFRKIDLNNTGFVTRDAFIDFWVNGNMLIMDTTTQIFKILKQKDQSFIVKDDFKPLLKE
LLATHPGLEFLQSTPEFQERYAETVTYRIFYYINRSGNGRITFRELKRGNLIDAMLHADE
EEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLMRYGNHALTYRIVDRIFSQVA
RKFTNKVEGKMGYEDFVYFILAEEDKSSVPSLEYWFKCIDLDANGIITRNEMQFFYEEQL
HRMECMAQEAVLFEDILCQMIDMIGPENESHITLHDLKGSKLSGNVFNILFNLNKFMAFE
TRDPFLIRQERENPTLTDWDRFAHREYIRLSMEEDVEDASNGSAEVWDESSLEAPF
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggtggatacggttattcccggagatatggcttgtttggatgcagatttgttgcagctt
caggaaatgtcttcctttgttctcaattctaaacctggattcactcagaagctcttcgac
cagtggctttctcttcccgaagctcagcgacaggttggatcattgcttaaggatgctgta
gctggagctcctatcaatgttactggaagtgcatcgggttctaattctgccactatacca
tctatgtttcctgcgggaagtgctcctccgctttcaccaaggagttgtggttcaccccgt
acaaccaaacagagagccccttctaacttaggttctactctcaaagtagtcaacgagcct
gttaaagagcctatacctcagttttatttccaaaatggtcgccctccaccaagcgagatt
aaagagcaatgtatgtttagaatcaatcacttcttttatggtcacatggatggcttgcag
atacaagaattcaagttagtcaccagagaaatctgcaagctcccatctttcttctccact
tcccttttccggaagatcgatctcaacaatacaggttttgttactagagatgcatttatt
gatttttgggtaaacgggaacatgttgataatggatacaacgacccaaatcttcaagata
ctaaagcagaaagatcagagtttcattgttaaggatgatttcaaaccactactcaaagaa
ctgttggcgacgcatcctgggctagagttcctgcaatccacacctgaattccaagaaaga
tatgctgaaactgtcacctaccgaatattttattacataaatagatctggcaatggtcga
attacatttagggagcttaaacggggaaacttaattgatgctatgctacatgctgatgaa
gaagaagatattaacaaagtgttgagatacttctcgtatgagcatttctatgtcatatac
tgcaagttctgggagctggatacggatcacgatttcctgattgacaaagaaaatcttatg
cgatatggaaaccatgctcttacctaccggattgtcgacagaatattctcccaggttgct
aggaagttcactaacaaagttgaagggaagatggggtatgaggactttgtctatttcatt
cttgcggaagaagataaatcgtcagtgcctagcctagaatattggtttaagtgcatagac
ttggatgcaaatgggattattacgcgaaatgagatgcaattcttttatgaagagcagttg
catagaatggagtgcatggcgcaagaggctgttcttttcgaggatatcttatgtcagatg
attgatatgatcggacctgagaacgaaagccatataacgctgcatgacctgaaaggctca
aagctctctggaaacgtcttcaacatcctatttaatctcaacaaatttatggcatttgaa
acccgggatccattcctcattcgtcaggagcgagagaaccctacattgacagattgggac
cgttttgcacatagagagtatattaggctatcaatggaagaagatgttgaagatgcatct
aatggaagtgctgaggtttgggatgagtcgtcgctggaggctcccttttga
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