KEGG   Arabidopsis thaliana (thale cress): AT5G37720
Entry
AT5G37720         CDS       T00041                                 
Symbol
ALY4
Name
(RefSeq) ALWAYS EARLY 4
  KO
K12881  THO complex subunit 4
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03013  Nucleocytoplasmic transport
ath03015  mRNA surveillance pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT5G37720 (ALY4)
  09122 Translation
   03013 Nucleocytoplasmic transport
    AT5G37720 (ALY4)
   03015 mRNA surveillance pathway
    AT5G37720 (ALY4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT5G37720 (ALY4)
   03041 Spliceosome [BR:ath03041]
    AT5G37720 (ALY4)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     AT5G37720 (ALY4)
    TREX complex
     AT5G37720 (ALY4)
Spliceosome [BR:ath03041]
 Complex C
  Other components
   EJC/TREX
    AT5G37720 (ALY4)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    AT5G37720 (ALY4)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3
Other DBs
NCBI-GeneID: 833750
NCBI-ProteinID: NP_198588
TAIR: AT5G37720
UniProt: Q6NQ72 A0A178UKT9
LinkDB
Position
5:complement(14981619..14984730)
AA seq 288 aa
MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGPLAVNARPSSFTI
NKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVE
RYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSG
RVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGGMRGGR
GGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLDKDLESYHADAMNTS
NT seq 867 nt   +upstreamnt  +downstreamnt
atgtctggagcattgaatatgactcttgatgagattgttaagaggggtaaaactgcaagg
tctgggggaagagggatttctcgtgggcgtggtcgtggacgtggtggtggtggaagagga
gctggacctgctagaagaggtcctcttgctgtgaatgctcgtccatcatctttcaccatt
aacaagcctgtccgtagggtcaggagcttgccatggcaaagcggtttgtttgaagatggc
ctaagagctgccggggcatcaggagttgaagttggaaccaggctccatgttacaaatctg
gaccagggtgtgacaaatgaagatataagggaactcttctctgagattggggaggtagag
cgttatgcgattcattatgacaaaaatgggcgtccaagtggcacagctgaagtggtgtat
ccaagaagaagtgatgcatttcaagctctgaagaaatataacaatgtgctattggatgga
aggccaatgagacttgagattttgggtggcaacaattcttccgaggctcctttatctggt
cgtgtgaatgtgaatgtcactggactcaatggaaggctgaagaggacggttgttatccaa
caaggaggaggagggagaggaagagttagaggtgggagaggaggaagaggtccagctcct
actgtcagtcgccgccttccaattcataaccagcagggaggagggatgagaggaggaaga
ggcgggtttcgtgctagagggcgtggtaatggtggccgtggtcgtggtggtggaagagga
aatggaaagaagccagtggagaagtcagctgctgatcttgacaaagatcttgagagctat
cacgctgatgccatgaacacctcttaa

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