Arabidopsis thaliana (thale cress): AT5G37720
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Entry
AT5G37720 CDS
T00041
Symbol
ALY4
Name
(RefSeq) ALWAYS EARLY 4
KO
K12881
THO complex subunit 4
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03013
Nucleocytoplasmic transport
ath03015
mRNA surveillance pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT5G37720 (ALY4)
09122 Translation
03013 Nucleocytoplasmic transport
AT5G37720 (ALY4)
03015 mRNA surveillance pathway
AT5G37720 (ALY4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G37720 (ALY4)
03041 Spliceosome [BR:
ath03041
]
AT5G37720 (ALY4)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
AT5G37720 (ALY4)
TREX complex
AT5G37720 (ALY4)
Spliceosome [BR:
ath03041
]
Complex C
Other components
EJC/TREX
AT5G37720 (ALY4)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
AT5G37720 (ALY4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
833750
NCBI-ProteinID:
NP_198588
TAIR:
AT5G37720
UniProt:
Q6NQ72
A0A178UKT9
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All DBs
Position
5:complement(14981619..14984730)
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AA seq
288 aa
AA seq
DB search
MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGPLAVNARPSSFTI
NKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVE
RYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSG
RVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGGMRGGR
GGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLDKDLESYHADAMNTS
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgtctggagcattgaatatgactcttgatgagattgttaagaggggtaaaactgcaagg
tctgggggaagagggatttctcgtgggcgtggtcgtggacgtggtggtggtggaagagga
gctggacctgctagaagaggtcctcttgctgtgaatgctcgtccatcatctttcaccatt
aacaagcctgtccgtagggtcaggagcttgccatggcaaagcggtttgtttgaagatggc
ctaagagctgccggggcatcaggagttgaagttggaaccaggctccatgttacaaatctg
gaccagggtgtgacaaatgaagatataagggaactcttctctgagattggggaggtagag
cgttatgcgattcattatgacaaaaatgggcgtccaagtggcacagctgaagtggtgtat
ccaagaagaagtgatgcatttcaagctctgaagaaatataacaatgtgctattggatgga
aggccaatgagacttgagattttgggtggcaacaattcttccgaggctcctttatctggt
cgtgtgaatgtgaatgtcactggactcaatggaaggctgaagaggacggttgttatccaa
caaggaggaggagggagaggaagagttagaggtgggagaggaggaagaggtccagctcct
actgtcagtcgccgccttccaattcataaccagcagggaggagggatgagaggaggaaga
ggcgggtttcgtgctagagggcgtggtaatggtggccgtggtcgtggtggtggaagagga
aatggaaagaagccagtggagaagtcagctgctgatcttgacaaagatcttgagagctat
cacgctgatgccatgaacacctcttaa
DBGET
integrated database retrieval system