Arabidopsis thaliana (thale cress): AT5G38890
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Entry
AT5G38890 CDS
T00041
Name
(RefSeq) Nucleic acid-binding, OB-fold-like protein
KO
K07573
exosome complex component CSL4
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT5G38890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G38890
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AT5G38890
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
AT5G38890
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Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
ECR1_N_2
CHASE5
Motif
Other DBs
NCBI-GeneID:
833880
NCBI-ProteinID:
NP_568559
TAIR:
AT5G38890
UniProt:
A2RVT9
A0A654G6B9
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All DBs
Position
5:15569418..15571169
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AA seq
191 aa
AA seq
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MTTGLVTPGDVIGKATEFKAGKGAYVNDATIYASLTGTCRIVSPLPESIDQRAIVEVTGH
KAHGPIPETGSVVIARVTKVMTKMAAVDILCVGSKAVRENFAGVIRQQDVRATEIDKVDM
HQSFHAGDIVRAMVLSLGDARAYYLSTAKNELGVVSAESAAGETMVPISWTEMQCPLSGQ
TEQRKVAKVGN
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggggctagtaacgccgggagatgtaatcgggaaagcgacagagtttaaagct
ggaaaaggagcttacgtcaacgacgccaccatctacgcttccctcacaggaacttgccgg
attgtttctcctcttcccgaatcaattgatcagagagctattgtggaagttacaggtcac
aaggcacatggtcctattccagagactggttctgttgtcatagcaagagtgactaaagtt
atgactaagatggctgctgttgatatcttgtgtgttggttcaaaagccgttcgtgaaaat
tttgctggtgtaattaggcaacaagatgttagagcaacagagattgacaaagttgacatg
catcagtctttccatgctggtgacattgttagagctatggttctgtctcttggtgatgca
cgggcttactacttgtcaactgctaagaatgaacttggtgtggtctcagctgaaagtgct
gcgggcgaaacaatggttccgataagttggacagagatgcagtgccccttgtcgggccaa
accgagcagagaaaagttgccaaggtgggtaattga
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