Arabidopsis thaliana (thale cress): AT5G39550
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Entry
AT5G39550 CDS
T00041
Symbol
VIM3
Name
(RefSeq) Zinc finger (C3HC4-type RING finger) family protein
KO
K10638
E3 ubiquitin-protein ligase UHRF1 [EC:
2.3.2.27
]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ath04121
]
AT5G39550 (VIM3)
03036 Chromosome and associated proteins [BR:
ath03036
]
AT5G39550 (VIM3)
Enzymes [BR:
ath01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
AT5G39550 (VIM3)
Ubiquitin system [BR:
ath04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
AT5G39550 (VIM3)
Chromosome and associated proteins [BR:
ath03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
AT5G39550 (VIM3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAD_SRA
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-C3HC4_4
zf-RING_2
zf-RING_5
RING_XB3-XBAT31
PHD
TRAF3_RING
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
833951
NCBI-ProteinID:
NP_198771
TAIR:
AT5G39550
UniProt:
Q9FKA7
A0A654G6G1
LinkDB
All DBs
Position
5:complement(15837178..15840678)
Genome browser
AA seq
617 aa
AA seq
DB search
MAIETQLPCDGDGVCMRCQVNPPSEETLTCGTCVTPWHVPCLLPESLASSTGEWECPDCS
GVVVPSAAPGTGNARPESSGSVLVAAIRAIQADETLTEAEKAKKRQKLMSGGGDDGVDEE
EKKKLEIFCSICIQLPERPITTPCGHNFCLKCFEKWAVGQGKLTCMICRSKIPRHVAKNP
RINLALVSAIRLANVTKCSVEATAAKVHHIIRNQDRPEKAFTTERAVKTGKANAASGKFF
VTIPRDHFGPIPAENDVTRKQGVLVGESWEDRQECRQWGAHFPHIAGIAGQSAVGAQSVA
LSGGYDDDEDHGEWFLYTGSGGRDLSGNKRINKKQSSDQAFKNMNESLRLSCKMGYPVRV
VRSWKEKRSAYAPAEGVRYDGVYRIEKCWSNVGVQGSFKVCRYLFVRCDNEPAPWTSDEH
GDRPRPLPNVPELETAADLFVRKESPSWDFDEAEGRWKWMKSPPVSRMALDPEERKKNKR
AKNTMKARLLKEFSCQICREVLSLPVTTPCAHNFCKACLEAKFAGITQLRERSNGGRKLR
AKKNIMTCPCCTTDLSEFLQNPQVNREMMEIIENFKKSEEEADASISEEEEEESEPPTKK
IKMDNNSVGGSGTSLSA
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgaaactcagcttccttgcgacggtgacggtgtgtgtatgcggtgtcaggtg
aatcctccgtcagaagagactctcacttgtggcacgtgcgtcactccatggcacgtgccg
tgtctcctccccgaatcactcgcttcttccactggagagtgggagtgtcccgattgctcc
ggcgttgtcgttccctccgccgctccgggtaccggaaacgctcgacctgaatcttccggt
tcagttctcgttgctgcgatccgtgcgattcaggctgatgagactttaaccgaagctgag
aaagccaaaaaaaggcagaaactgatgagtgggggtggtgacgatggtgtcgatgaagaa
gagaagaagaagttagaaatcttttgttctatttgcattcaattgccagaaagacctatc
acgacaccgtgtgggcacaatttctgtttgaaatgtttcgagaaatgggcagtaggtcaa
gggaagctaacttgtatgatatgccgaagcaaaattccgagacatgtggcaaaaaatcct
cgcatcaacttagctctagtttctgctattcgtttagcaaatgttaccaaatgttctgtt
gaggcaactgcagccaaggttcatcatattatccgcaaccaagaccgtcctgagaaagca
tttactaccgagcgggcagtaaaaactgggaaagctaatgctgctagcggtaagtttttt
gtgacaatacctcgtgatcattttggtcccataccagctgagaatgatgtcactagaaag
caaggtgttttggttggagaatcttgggaggacaggcaagagtgtaggcagtggggagct
catttcccgcatattgctggcattgccgggcaatcagcggttggagctcagtctgtggcc
ctctctggaggttatgacgatgatgaggatcatggtgaatggtttctctacacaggaagt
ggtggaagggatctcagtggaaacaaaagaattaacaagaaacagtcgtctgaccaggcg
tttaaaaacatgaatgaatctctaagacttagttgcaaaatgggctatcctgtccgagtt
gtcaggtcttggaaggagaagcgttctgcatatgcccctgctgaaggtgtgagatatgat
ggggtctatcgaattgagaagtgctggagtaatgttggagtacagggttcttttaaggtc
tgtcgttacctgtttgttagatgtgacaatgagccagctccatggaccagtgatgagcat
ggcgatcgtccaagaccgttgcctaatgttccggagcttgagactgctgctgacctgttt
gtgagaaaggagagtccatcatgggatttcgatgaagctgagggtcgttggaaatggatg
aagtctcctcctgttagcagaatggctttggatcctgaggagaggaagaagaataagaga
gcaaaaaatactatgaaggccagacttctgaaagaatttagttgccaaatctgtcgggaa
gtgctgagtcttccagtgacgacgccttgtgcacacaacttctgcaaagcatgcttagaa
gcgaagtttgctgggataactcaactgagagagagaagcaatggcggacgtaaactacgt
gcaaagaagaacatcatgacctgcccttgctgcacgacggatctctccgagtttctccaa
aacccgcaggtgaacagagagatgatggagataatagagaattttaagaagagtgaggaa
gaggctgatgcatccatttctgaagaagaagaagaagaatccgaacctccaactaagaag
attaagatggataacaactctgttggtggtagtggtacaagtctctcagcttaa
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