KEGG   Arabidopsis thaliana (thale cress): AT5G42190
Entry
AT5G42190         CDS       T00041                                 
Name
(RefSeq) E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
  KO
K03094  S-phase kinase-associated protein 1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03083  Polycomb repressive complex
ath04120  Ubiquitin mediated proteolysis
ath04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    AT5G42190
   04120 Ubiquitin mediated proteolysis
    AT5G42190
  09126 Chromosome
   03083 Polycomb repressive complex
    AT5G42190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ath04131]
    AT5G42190
   04121 Ubiquitin system [BR:ath04121]
    AT5G42190
   03036 Chromosome and associated proteins [BR:ath03036]
    AT5G42190
Membrane trafficking [BR:ath04131]
 Endosome - Lysosome transport
  Acidification regulators
   RAVE complex
    AT5G42190
Ubiquitin system [BR:ath04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Adaptor protein
     AT5G42190
   Cul7 complex
     AT5G42190
Chromosome and associated proteins [BR:ath03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     AT5G42190
  Centromeric chromatin formation proteins
   Kinetochore proteins
    CBF3 complex
     AT5G42190
SSDB
Motif
Pfam: Skp1 Skp1_POZ
Other DBs
NCBI-GeneID: 834224
NCBI-ProteinID: NP_568603
TAIR: AT5G42190
UniProt: Q9FHW7
Structure
LinkDB
Position
5:complement(16854191..16855741)
AA seq 171 aa
MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC
KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN
IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
NT seq 516 nt   +upstreamnt  +downstreamnt
atgtcgacggtgagaaaaatcactcttaagagttcggatggcgaaaacttcgaaattgac
gaagcggtggcgctagagtcacaaaccatcaaacatatgattgaagatgactgtaccgat
aatggtatccctctccctaatgtcacaagcaagatcctttcgaaggtgattgagtactgt
aagagacatgtcgaagctgctgagaaatccgaaaccacggccgatgctgctgctgctact
actaccaccaccgtcgcgtcgggttctagtgatgaagatctcaagacttgggattctgag
tttatcaaagttgatcagggcactctcttcgatcttatcctggctgctaactacttgaat
atcaagggactgttggacttgacttgccagacagtggctgatatgattaaaggaaaaacc
ccagaagaaatccgtaagacgttcaatatcaagaacgacttcacgccagaggaagaagaa
gaggttcgccgtgagaatcagtgggcgtttgaatga

DBGET integrated database retrieval system