Arabidopsis thaliana (thale cress): AT5G42340
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Entry
AT5G42340 CDS
T00041
Symbol
PUB15
Name
(RefSeq) Plant U-Box 15
KO
K27970
U-box gene family group I [EC:
2.3.2.27
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
AT5G42340 (PUB15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ath04121
]
AT5G42340 (PUB15)
Enzymes [BR:
ath01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
AT5G42340 (PUB15)
Ubiquitin system [BR:
ath04121
]
Ubiquitin ligases (E3)
U-box type E3
AT5G42340 (PUB15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
U-box
Arm_2
Cnd1
HEAT_2
KAP
zf-Nse
MLKL_N
SSrecog
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
834240
NCBI-ProteinID:
NP_199049
TAIR:
AT5G42340
UniProt:
Q681N2
A0A5S9YAF7
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All DBs
Position
5:complement(16927893..16930532)
Genome browser
AA seq
660 aa
AA seq
DB search
MVDVMDTDEEATGDAENRDEEVTAEEPIHDEVVDAVEIHEEEVKEDDDDCEGLVSDIVSI
VEFLDQINGYRRTQQKECFNLVRRLKILIPFLDEIRGFESPSCKHFLNRLRKVFLAAKKL
LETCSNGSKIYMALDGETMMTRFHSIYEKLNRVLVKAPFDELMISGDAKDEIDSLCKQLK
KAKRRTDTQDIELAVDMMVVFSKTDPRNADSAIIERLAKKLELQTIDDLKTETIAIQSLI
QDKGGLNIETKQHIIELLNKFKKLQGLEATDILYQPVINKAITKSTSLILPHEFLCPITL
EIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNFALKNLIMQWCEKN
NFKIPEKEVSPDSQNEQKDEVSLLVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANA
GAIPLLVQLLSYPDSGIQENAVTTLLNLSIDEVNKKLISNEGAIPNIIEILENGNREARE
NSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDALTALFNLSLNSANKGRA
IDAGIVQPLLNLLKDKNLGMIDEALSILLLLASHPEGRQAIGQLSFIETLVEFIRQGTPK
NKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTNRAQRKANALIQLISKSEQI
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggtcgatgtgatggatacagatgaagaagccacaggagatgcagagaaccgtgatgaa
gaagttaccgcagaagaaccgattcacgatgaggttgtggatgcggtggagattcatgag
gaagaagtgaaagaagatgatgatgattgtgaaggattggtgagcgatatcgtatcgatt
gtcgagtttttggatcagattaacggttatcgaagaacacaacaaaaagaatgttttaat
ctcgttagacgattgaagattcttattccatttttggatgagattcgaggttttgaatca
ccaagttgcaagcattttttaaatcgtttgaggaaagtgtttcttgctgccaagaaatta
ttagaaacttgcagcaatggcagtaaaatctatatggcattggatggcgaaacaatgatg
acgagatttcattcgatttacgaaaagttgaatcgtgttcttgttaaagctccttttgat
gaattaatgatttctggtgatgcgaaagacgagattgattcattgtgtaaacaactgaaa
aaagcaaaaagaagaacagatacacaagacatagagctagcagtagacatgatggtggta
ttctcaaaaaccgatcctcgaaacgcagatagcgcgataatagagaggctagcgaaaaag
cttgagctacaaacaattgatgatttaaagacagaaactatagccatacaaagcttaatc
caagacaaaggaggtttgaacatagagactaaacaacatatcattgagcttcttaacaag
ttcaagaagcttcaaggtcttgaagctaccgacattctctaccaacccgtcatcaataaa
gcaatcaccaagtcaacgtctctaatattacctcatgagtttttgtgtcctataacactc
gaaataatgcttgacccggttatcatcgccactggacagacatatgagaaggagagtata
cagaaatggtttgacgcaggacataagacttgtcctaaaacaagacaggagttagatcat
ctctctcttgcacctaacttcgctttaaagaacttgattatgcagtggtgtgagaagaac
aatttcaagattccagagaaagaagtaagtcctgactcacaaaatgagcagaaagatgag
gtctctttgctggtggaagcgttatcgtcaagccaactggaagaacaacgaagatcagtg
aagcagatgcgtttgctagccagagaaaatcccgagaaccgcgttttaatagcgaatgca
ggagcgattcctttgttagttcaactcctttcttaccctgattcaggaatccaagaaaac
gcggtaacgacattgttgaatctatctatcgacgaggtcaacaagaaactcatttcaaat
gaaggagctattccaaacattattgaaatccttgaaaatggaaacagagaggcaagagag
aactctgctgcagctttgtttagtttatcgatgctcgatgagaacaaagtaactatcgga
ttatcgaatgggataccgcctttagtcgatttactacaacatgggacattaagagggaag
aaagatgctctcactgcactctttaacttgtctcttaactcagctaataaaggaagagct
atcgatgctggtattgttcaacctttgcttaaccttcttaaagataaaaacttagggatg
atcgatgaagcgctttcgattctgttgctgcttgcatcacaccctgaaggacgtcaagcc
attggacaactctccttcattgaaacacttgtggaattcatcagacaaggcaccccgaaa
aacaaagagtgtgcgacctcggtgctgcttgaactaggctctaacaactcgtcttttatc
ctcgcagcgcttcaattcggagtttatgaatatctggtagaaataaccacctctggaaca
aacagagctcagagaaaagcaaatgctcttatacaactcataagcaaatctgaacaaatt
tag
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integrated database retrieval system
