Arabidopsis thaliana (thale cress): AT5G42820
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Entry
AT5G42820 CDS
T00041
Symbol
U2AF35B
Name
(RefSeq) Zinc finger C-x8-C-x5-C-x3-H type family protein
KO
K12836
splicing factor U2AF 35 kDa subunit
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT5G42820 (U2AF35B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT5G42820 (U2AF35B)
Spliceosome [BR:
ath03041
]
Complex A
U2 snRNP components
U2 related factors
AT5G42820 (U2AF35B)
Complex B
AT5G42820 (U2AF35B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
RRM_1
zf_CCCH_4
Torus
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
834293
NCBI-ProteinID:
NP_199096
TAIR:
AT5G42820
UniProt:
Q9FMY5
A0A178UM74
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Position
5:complement(17169283..17172787)
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AA seq
283 aa
AA seq
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MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED
HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL
RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD
RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDEGV
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggcagagcatttagcttcaatctttggtactgaaaaggatagagtgaattgtccgttt
tactttaagattggtgcttgtcgtcacggtgaccggtgctcacggcttcataaccgtccc
accatctcgccgacgcttctcctctcgaacatgtaccagagacctgacatgataactcca
ggtgtggatcctcagggacagccgttagacccgagtaagatccaagaccactttgaggat
ttctacgaagatattttcgaagaactcaacaagtttggtgaagtggagagtctcaatgtt
tgtgacaatcttgctgatcatatgattgggaatgtgtatgttctgtttaaggaggaggat
cacgcagctgctgcgttgcaggctttgcaggggagattttattccggtcgtcctatcatt
gctgatttctctcctgtgacggattttagggaagctacttgtaggcagtatgaagaaaac
agctgtaaccgtggtgggtactgtaatttcatgcatgtgaagcagatttcgagggagctt
aggaggaaattgtttgggaggtatcgtcgttcataccgtcggggaagcagaagtcgaagc
aggagtataagccctcgacgtaagagagagcattcgcgagagcgagagagaggggacgtt
agggaccgtgaccggcatggaaatgggaaaaggagcagtgatagatcagagaggcatgat
cgggatggtggtggaaggaggagacatggaagcccgaaacggagcagaagcccacgaaat
gtgagagaaggaagcgaggaaaggagggcgagaattgagcaatggaaccgagaacgtgat
gagggagtttaa
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