Arabidopsis thaliana (thale cress): AT5G42920
Help
Entry
AT5G42920 CDS
T00041
Symbol
THO5
Name
(RefSeq) THO complex, subunit 5
KO
K13174
THO complex subunit 5
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
AT5G42920 (THO5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G42920 (THO5)
03041 Spliceosome [BR:
ath03041
]
AT5G42920 (THO5)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
AT5G42920 (THO5)
Spliceosome [BR:
ath03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
AT5G42920 (THO5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
834304
NCBI-ProteinID:
NP_974873
TAIR:
AT5G42920
UniProt:
F4K4J0
LinkDB
All DBs
Position
5:complement(17205971..17209650)
Genome browser
AA seq
819 aa
AA seq
DB search
MEDGEIEEGMVTADEFPTPEVTTIETIQPPREPGKSPLELLRESKTSVEEIVAKMLSMKK
QGNHKSEIRELLTQMFLNFVNLRQANRAILTEEDKVKAETERAKAPVDFTTLQLHNLMYE
KSHYVKAIKACRDFKSKYPDIDLVPEQDFFRHAPEAIKDQSLSSDSSHVLMPKRLNFELH
QRKELCKHRARLEQQKKSLLETIAERKKFLSSLPLHLKSLKKASLPVQNHLGIQHTKKLK
QHNLAELLPPPLYVLYSQLLAQKEAFEESIELEVVGSLKDAQAYARQQSRKDSGMSSNTE
SSRLEDDGPDDDDDGQRRRKRPKKLTSKEGSDKAGLYQVHPLKIVLHIYDDEIPDTKSLK
LVILKFEYLLKLNVVCVGAEGSQDGPEKNIFCNLFPDDAGLEPPHQSTKLILGDGQTFDE
NRTSRPYKWVQHLAGIDISPVLLGQEAHNTDPAKSDTFVPDLSLYRQQHRVQTVLRRIRL
RKKAHLALAEQLDLLMKHELPVVNCEDAPWALHKVLCALDSWLHIQSSASKSCSLTLNSV
EQVPEPMEIDVDGRSISGKEDFESIREDGELPSLVTAAASLTSSNHTPSKVSNQARSRQL
ALMTKNLDSPISKGKSPSFKKYEDDLDLVLDDDSEIDEPTGRTEAHVEELCPEKADNSWV
DYGSREFALVFSRKTDGGKLWKLEAMVQISMEYPLRPPLFSLSLHASSSSGNENGTNESD
HYNELRAMEAEVNLHMLKIIPSDQENYLLSHQIRCLAMLFDYYVDDPSPDSKRGTATTVV
DVGLCKPVDGKLLVRSFRGRDHRKMISWKGRGCASGYPC
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggaggacggcgaaatagaggaaggaatggtaactgccgacgaattcccgacgccggaa
gtaactaccatagagactatacaacctccccgagagccaggaaaatctccactcgagcta
cttcgagagagcaaaacctccgtagaagaaatcgtcgcgaagatgctctccatgaaaaaa
caaggaaaccacaaatctgagattcgagaactcctcactcaaatgttcctcaacttcgtc
aatcttcgtcaggcgaatcgggcgattttgactgaggaagataaagtgaaagcggagacg
gaaagagcaaaggcacctgttgatttcacgacattgcaattgcataatcttatgtatgag
aagagccattacgttaaagctatcaaggcttgtagagatttcaaatctaagtatcctgat
attgaccttgttcctgaacaagacttctttcgtcatgctcctgaagctatcaaagatcaa
tcgctttcaagtgatagttctcatgttttgatgcctaagagactcaattttgagcttcat
cagaggaaagaattgtgtaagcatcgagcgagattggagcaacagaagaagagtttatta
gaaaccattgcggagcgtaagaagtttttgtcgagtcttcctctacaccttaagtctctg
aagaaagcatcgcttccagtacagaaccacttgggtatacagcacacaaagaaactgaag
cagcataatttagctgagctgcttcctcctccgctttatgttctatactcacagctcttg
gcacaaaaggaagcttttgaggagagtattgaattggaggtagttgggagtcttaaggat
gctcaagcttatgctagacaacaatccagaaaggactcaggtatgtcgagtaatacagag
agttctaggttggaggatgatggacctgatgacgatgatgatggacaaaggagaagaaaa
cgacccaagaaacttactagcaaagaaggttctgacaaggcaggattatatcaagtccac
cctctcaaaattgtccttcacatatatgatgatgagataccagatacaaaatccttgaaa
cttgtcattctcaagtttgagtacttgctgaagttgaatgttgtatgtgttggcgctgaa
ggctctcaggatggaccagaaaaaaacatattttgtaacttgtttccagatgacgctgga
cttgagcctcctcatcagtcaaccaagctcatccttggtgatggtcagacgtttgatgag
aacagaacttcaaggccttataaatgggtacaacatttggcgggaattgatatttcaccg
gttttattaggccaagaagctcataacactgacccagctaaaagtgatacgtttgtgcct
gatctttcattgtatcgccagcagcatagagtgcaaacagttctgcgaagaatacgcttg
cggaaaaaagcgcatctggctcttgcggaacagcttgatttgcttatgaaacatgagtta
ccagtggtgaactgcgaagatgctccttgggcactgcataaggttctctgtgctttggat
tcctggttacatatacaatcttcagctagtaagtcatgctctctgactctgaacagtgtg
gaacaagttccagaacctatggaaatcgatgtagatggaagatctatttctggaaaagaa
gattttgaaagtatacgggaagatggagaacttccctctttggtcacggcggctgcttcg
ttaaccagttccaatcataccccatcgaaagtatctaatcaagcacggtcaaggcagttg
gccttgatgacaaagaatctagattctccgattagcaaaggaaagtccccaagtttcaag
aaatacgaagatgatttggatcttgttctggacgatgatagtgaaatagatgagccaacc
ggaagaactgaggcgcatgtggaagagttatgccctgagaaagctgataattcatgggtg
gattatggttcgagagagtttgcgcttgtgttctccaggaaaacagatggcggaaagttg
tggaagttagaagcaatggtacaaattagcatggagtatcctcttcgacctcctttgttt
tctctgtctctccacgcatcttcttcatcaggaaatgaaaatgggacaaatgaaagtgac
cattacaatgaacttcgagcaatggaagcagaagtgaaccttcatatgttgaagattatt
ccttcagatcaagaaaactatctcctatctcatcaaatcagatgcttagcaatgttgttc
gactattacgtggatgacccatctccagattccaaaagaggaacagccacaactgtggtt
gatgtcggtttgtgcaagcctgttgacggtaagcttcttgtgagatcattcagaggcaga
gatcaccggaaaatgatctcatggaagggcagaggatgtgcatcgggttatccatgctag
DBGET
integrated database retrieval system
