KEGG   Arabidopsis thaliana (thale cress): AT5G43530
Entry
AT5G43530         CDS       T00041                                 
Name
(RefSeq) Helicase protein with RING/U-box domain-containing protein
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT5G43530
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    AT5G43530
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C HIRAN zf-C3HC4 zf-C3HC4_3 DEAD zf-RING_UBOX ResIII zf-C3HC4_2 zf-RING_2 zf-RING_5 zf-C3HC4_4 Prok-RING_4 RING_XB3-XBAT31 AAA_34
Other DBs
NCBI-GeneID: 834373
NCBI-ProteinID: NP_199166
TAIR: AT5G43530
UniProt: Q9FIY7
LinkDB
Position
5:17489271..17495024
AA seq 1277 aa
MAIVDDAEMRLTESEAVSSSDDRKIVADTPDFIDESSLVIRTTTGVRISALPAEQSLVDS
DGSNSEVTLPAKDEVISDGFTCVNKEIVESDSFREQNLEIGEPDLDVENRKEAMIIDSIE
NSVVEIVSSASGDDCNVKVEVVEPELLVENLVVAKEEEEMIVDSIEDSVVEIVSTASGCD
CNVKVEVVDPELCVDNLVVVKEEEMIADSIAESVVETVSRGLDYECVDVKVKEEPDLGTK
LEEDSVFPNVLEKKDEVIKVLEDQPSEINKKLEQENDDLFSSGDSDGTSAKRRKMEMESY
APVGVESCILAPTPLRVVKPEKLDTPEVIDLESEKSYTHVKMEPVEEIKVEAVKMSSQVE
DVKFSREQKSVYVKKEPVGARKVKVEDGDFPVEKDWYLVGRSLVTATSTSKGRKLEDNEI
VNFTFSSVAKWKVPNIVRFSTKRCGEIGRLPMEWSNWAVSLLRSGKVKMLGRCVAAPPFL
TMMQEIMLYVSFYIHSSIFTDVSKSTWRIGSSPNLESTLHPLLQLFKHLTIKPYQKAEFT
PEELNSRKRSLNLEDDYDERAALLAIAKRRKGCQQSLEQNKDEEEAPESYMNRVVGAADS
YNLEEMEAPSTLTCNLRPYQKQALYWMSESEKGIDVEKAAETLHPCWEAYRICDERAPSI
YLNIFSGEATIQFPTATQMARGGILADAMGLGKTVMTIALILARPGRGNPENEDVLVADV
NADKRNRKEIHMALTTVKAKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTH
DAKAIASHDVVLTTYGVLTSAYKQDMANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFE
LSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLIKA
ILRPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVA
QGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQQYADLDSLARRFLDNNPDSVSQNAP
SRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICR
TILKRTELISCPTDSIFRVDVVKNWKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFL
DLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASS
VFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGALT
DEEVRSARLEELKMLFR
NT seq 3834 nt   +upstreamnt  +downstreamnt
atggccattgttgatgacgcagagatgcggttaaccgaatccgaagctgtttcgagttcc
gatgatcgtaagatcgttgcagatactcccgattttatagacgaatcctctctagtcatc
agaacaaccactggagtccgaatctcagctctaccggcggagcaaagccttgttgactcc
gatggatctaactcggaggttacgcttccggcgaaagacgaggtaattagtgatggtttt
acttgtgtgaacaaagagattgtagaatctgattcatttagggagcagaatctagagatt
ggagaacctgatttagatgttgagaatcgcaaagaagcgatgattattgattcgatagaa
aattctgtggttgaaattgtttcaagtgcttctggtgatgattgtaatgttaaggtagag
gtagtggaacctgaattgcttgttgagaatctggtggttgctaaagaagaagaagaaatg
attgttgattctatagaagattctgttgttgaaattgtttcaactgcttcgggttgtgat
tgtaatgtgaaggttgaggtagtggaccctgaattgtgtgttgataatctggtggttgtt
aaagaagaagaaatgattgctgattcgatagcggaatctgtggttgaaactgtttcgaga
ggtttagattatgagtgtgttgatgtcaaggtgaaagaagaacctgatttaggtacaaaa
ttggaagaagattctgtttttccgaatgtgcttgagaagaaggatgaggtaatcaaagtc
ctggaagaccagccaagtgagattaataagaagctagagcaagagaatgatgatctcttt
tcgtctggagattcagatggtacatcagccaagagaaggaaaatggagatggaatcatat
gcaccagtcggtgtggaaagctgtatcctggcgccgacgcctcttcgagttgtgaaacca
gagaagttggatacccctgaagttattgatctggaatcagagaaaagttatactcatgtg
aagatggaacctgttgaggaaataaaggtggaagctgttaagatgagttctcaagtggaa
gatgtgaaatttagccgtgagcagaaatctgtgtatgtgaagaaggaaccagttggagca
agaaaggtgaaagtggaagatggagattttccggtggagaaagattggtatttggttggg
aggtcacttgttactgctacttctacgagtaaaggaaggaaattagaagataatgagatt
gtgaatttcacattttcttctgttgcaaaatggaaagtcccaaacattgttcgtttctct
accaaaagatgtggagagattggtagacttccgatggagtggtcaaattgggctgtgagc
cttttaagatctggtaaggtcaagatgttaggcagatgtgtagcggcgccaccatttctt
acaatgatgcaagaaattatgctatatgtcagtttttacattcacagctcgatattcact
gatgttagcaaatccacttggcggattggttcttccccaaaccttgagtccacccttcat
cctcttctccagcttttcaaacacttgacaatcaaaccttatcaaaaggcggagtttact
cctgaggaactcaactctcgtaaacgttcactgaatttggaggatgactatgatgaaaga
gcagcattgttggccatagcaaaaagaagaaaaggttgtcaacagtctctggagcagaac
aaagatgaagaagaggctcctgagtcatatatgaatcgggttgtcggcgctgccgattca
tacaaccttgaggaaatggaagctccaagtacactcacgtgtaacctgagaccgtaccag
aaacaagctctctactggatgtcggaatctgagaaaggaattgatgttgaaaaggcagct
gaaactctacatccttgctgggaggcttatcgaatctgtgacgagagggcaccttctatt
tatttgaacatctttagtggtgaagcaacaatccagtttccaacagcaacgcagatggca
agaggcggaatattggcagatgccatgggacttggtaaaactgtgatgacaattgcacta
atacttgcacggccaggccgaggtaacccggaaaatgaagatgtcttggtggcagatgtt
aatgcagataaacgcaataggaaggagattcatatggcactaacgactgtgaaggcaaaa
ggaggcactcttattatttgtcccatggcattgttaagccaatggaaggacgagcttgag
actcattcaaagcctgacactgtgtctgtgttagtttactatggaggggataggacacat
gacgcgaaagcaatagcgagtcatgatgtggttttgacaacttatggtgttttaacctca
gcttacaagcaggatatggcaaacagtattttccacaggattgattggtataggattgtt
cttgatgaagctcacacgatcaaatcatggaaaactcaagctgctaaagccacatttgag
ttatcttcacattgcagatggtgtctgactgggactcccttacaaaacaagctcgaagat
ctatacagtcttctatgtttcctgcatgttgaaccatggtgcaattgggcttggtggagt
aagttgatacagaagccttatgaaaatggtgatccacgaggactgaagctgatcaaggcg
attttgaggccattgatgctgagaagaacaaaggaaacaagggacaaagaaggaagtcta
attcttgaacttcctccaaccgacgtccaagtcattgaatgtgaacaatctgaagcagaa
cgtgacttctatacagccttgttcaagagatccaaagtccaatttgaccagtttgtggca
caaggaaaagttcttcacaactatgcaaacatcctcgagctcctcctccgtctacgccaa
tgttgtaaccacccttttctagttatgagccgagcagattcacaacagtacgctgactta
gatagccttgcaaggaggtttcttgataacaaccctgactctgtttcccaaaatgctcct
tctcgggcatatatcgaagaagttatccaagatttacgcgatggcaatagcaaagaatgt
ccaatatgtctggagtctgcagatgatcccgttctcacaccttgtgctcacagaatgtgc
cgtgaatgtctccttactagctggcgctctccatcttgtggtctatgcccaatctgcagg
acaatcctgaagagaaccgaacttatctcatgcccgacagatagtatattccgtgttgat
gtggtaaagaactggaaggagtcttcaaaggtttcggagctgctcaagtgcttagagaag
atcaagaaatctggttcgggcgagaagagcattgtctttagccagtggacttcatttttg
gatcttttggagattccattgcgaagaagaggatttgagtttcttagattcgatgggaag
ctggctcagaagggaagagaaaaggttttgaaagagttcaatgaaaccaaacagaaaacg
attctgcttatgtctctgaaagctggaggagtcggtctgaatctaactgcagcttcaagt
gtcttcttaatggatccatggtggaatccagcggtggaagagcaagcgatcatgagaatt
catcgaatagggcagaaacgaacggtattcgtcagaagattcattgtcaaggatacagtg
gaggaacggatgcagcaagttcaggcaaggaagcagaggatgattgccggagctttgaca
gatgaagaagtccggtctgcaagacttgaggagcttaaaatgttgttccgatga

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