Arabidopsis thaliana (thale cress): AT5G44840
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Entry
AT5G44840 CDS
T00041
Name
(RefSeq) Pectin lyase-like superfamily protein
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00040
Pentose and glucuronate interconversions
ath01100
Metabolic pathways
Module
ath_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AT5G44840
Enzymes [BR:
ath01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
AT5G44840
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
InlK_D2
Motif
Other DBs
NCBI-GeneID:
834514
NCBI-ProteinID:
NP_001318741
TAIR:
AT5G44840
UniProt:
F4KBP8
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Position
5:complement(18104769..18107140)
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AA seq
391 aa
AA seq
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MEIILRGVFLLTLLHSILVNGQIYDVLEFGADGNGITDDSKAFVKAWSAMCGSGGNSKTF
IIPSNKTFLLQPLTFQGPCKSPSVQVKFDGKIVAPINKAAWSDYKLFRWVSFKEIIGLTV
NGSGTIHGRGSSFWKQGLPASKRPTQLHFQRCNDLMITGITSFNSPKNHISISECKRVKI
TKIKLVAPHDSPNTDGINISESSDVDIYDTVIGTGDDCVAINSGSMNINIARMNCGPGHG
ISVGSVGRDGEESIVENVQVTNCTFIRTDNGARIKTWPNGKGYAKNILFKSLTFRETKNP
IIIDQNYVDKGRLDVEESAVAISNVTFTDLRGTSKLDEIIKIDCSKVTYCKDIVLDKIDI
ATVDGNKPIVECSNVYGKSINANEANGCFKT
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcatactacgtggtgtgttcttgttgactttactgcattctattcttgtaaac
ggccaaatctatgatgtgcttgaatttggtgccgatggaaatggtattaccgatgattca
aaggcttttgtgaaagcatggagcgctatgtgtggtagtggtgggaattcaaaaacattc
attattccatcaaacaaaacatttttactacaacctcttactttccaaggcccttgtaaa
tctccttccgtacaagttaagtttgacggaaagattgttgcacctataaataaagcagct
tggtcggactataagttatttagatgggttagttttaaggaaataatcggtttaacagtc
aatggttcgggaacaattcatggacgtggctcgtctttttggaagcaaggactgcctgct
tctaaacggcctacccaattgcattttcaaagatgcaacgatctcatgataactggaata
acctcattcaacagtccaaaaaaccatatatcgattagcgaatgcaaaagagttaaaata
acgaagataaaactcgtagcaccccacgatagtcctaacactgatggaattaatatctca
gaatcaagtgatgtcgatatatacgacacagttattggaactggagatgattgtgtagct
attaacagcggaagtatgaatatcaatatcgcaaggatgaattgtggacctggtcatgga
ataagtgtgggaagtgtaggaagagatggagaagaatctatagttgagaatgtccaagta
actaattgcactttcattaggacggataatggagctagaattaagacatggccgaatgga
aagggatacgcaaaaaatatactttttaagagtcttacatttagagaaaccaaaaatccg
ataataatcgaccaaaattatgttgataagggtcgcctagacgtggaggaatcagcagtg
gcaatcagtaacgtgacatttacagatctccgaggaacatcaaaactcgatgagattata
aagatagattgcagcaaagtcacatattgcaaagacattgttcttgataaaatcgatatt
gctacggtcgatggaaataagccaatcgttgaatgcagtaacgtatatggaaagtctatc
aatgctaacgaggccaatggttgtttcaaaacatag
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