Arabidopsis thaliana (thale cress): AT5G47010 Help Entry AT5G47010         CDS       T00041                                  Symbol LBA1 Name (RefSeq) RNA helicase   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism ath  Arabidopsis thaliana (thale cress) Pathway ath03013   Nucleocytoplasmic transport ath03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:ath00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     AT5G47010 (LBA1)    03015 mRNA surveillance pathway     AT5G47010 (LBA1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ath03019]     AT5G47010 (LBA1) Enzymes [BR:ath01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      AT5G47010 (LBA1)     5.6.2.5  RNA 5'-3' helicase      AT5G47010 (LBA1) Messenger RNA biogenesis [BR:ath03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      AT5G47010 (LBA1)    mRNA cycle factors     Common to processing body (P body) and stress granule      AT5G47010 (LBA1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase UvrD-helicase DEAD nSTAND3 NPHP3_N Helicase_RecD PhoH Viral_helicase1 ATPase AAA_16 SRP54 AAA_22 Ribosomal_S13_N AAA_25 AAA AAA_32 Motif Other DBs NCBI-GeneID:  834747 NCBI-ProteinID:  NP_199512 TAIR:  AT5G47010 UniProt:  Q9FJR0 A0A178USW1 LinkDB All DBs Position 5:19071824..19079453 Genome browser AA seq 1254 aa AA seqDB search MDSQQSDLFDTASQPDTVADEYTFLEFNTQGDSEFDYQDFGSPTAWPTPSDSISIADVAD RGEGGAAADHHSEASSPSSLSAGAGNGAKVGRGGVGGSGGVSSSSQVDALAAGVGNLNFE ETGDDDGFDYGKNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLV RAKHKEVCLHRDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCRDPCLNVNALKD MNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDATLEDLE KPGVDDEPQPVQPKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKR VAYFVFPKEENELRLVPGDELRLRYSGDAVHPSWQSVGHVIKLTAQEEVALELRANQGVP IDVNHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRR FGVPGLPELNASQVNAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP SNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEYLTLHYQVRHLDTSEKSELHKLQQL KDEQGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRFRQVLIDESTQ ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTLGIKPIRLQV QYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYVQLGQEEISAS GTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKE IEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLS KQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPRKIYNDRRLFYGGGAGMIGNDNFG SGNPNADRRGSRGRAGGSYLPSGPPNGARPGLHPAGYPIPRVPLSPFPGGPPSQPYAIPT RGPVGAVPHAPQPGNHGFGAGRGTSVGGHLPHQQATQHNVGTIGPSLNFPLDSPNSQPSP GGPLSQPGYGSQAFRDGFSMGGISQDFLADDIKSQGSHDPYNMADFATQASPGGFAVDYA TQGAHGAFPGNFMNQNSQGGYSRFSGINDFMSQEYMAHGGQGLFTQAGFIDSSQDDGQQN PYGVNNPNLQSQGLPNSLYSQPFAHYNTQPLNLSGPQQSQPNQSSQNPKHPYNG NT seq 3765 nt NT seq  +upstreamnt  +downstreamnt atggattctcaacagagcgatctctttgacaccgcatcgcagccggacacggtggccgac gagtatacctttttggaattcaatactcaaggcgattcagagttcgattaccaggatttt ggatcgccgacggcatggccgacaccgtctgattctatttccatcgctgacgttgccgat cgtggtgaaggaggagctgccgcggatcatcattctgaggcttcgtcaccttcgtccctc tctgccggtgccgggaatggtgcgaaagtgggacgcggtggagttggtggaagtggtggt gttagtagtagtagtcaggttgatgcattggccgctggtgtgggaaatttgaactttgaa gagactggtgatgatgatggttttgattatggtaaaaatgatttcacggagcacgcttgt aagtattgtggtatctcgaacccagcttgcgtcgttaggtgtaatgtggcttcttgtaga aagtggttctgcaattcaaggggaaacacctcaggctctcatattgtgaatcacctggtg cgagcaaaacacaaggaagtttgtctccatagagacagtccactaggggaaacaattctc gaatgctacaactgtgggtgtcggaatgtctttcttctcggtttcatctcagcaaagaca gatagtgttgtcgtccttctctgtagagatccttgtctaaatgtaaatgccctgaaggat atgaactgggacctaagtcagtggtgtcccttgattgacgacagatgtttcctcccctgg cttgttaaggtcccatcagagcaagaacagctaagggcacgccaaattagcgcacagcaa ataaacaagatagaggaattatggaagacaaatccggatgctactcttgaagaccttgaa aaacctggtgtagatgatgaacctcagcctgttcaacctaagtatgaagatgcgtaccag tatcaaaatgtgtttgcacctctaatcaaactcgaagcagactatgacaagatgatgaaa gagtctcaaagcaaggaaaacctcactgttcggtgggatattggtcttaacaagaagcgt gttgcatacttcgtcttcccaaaggaggaaaatgaattgcgattggtaccgggtgatgaa ctacgtctgcggtactcgggagatgctgttcatccatcctggcagtcagttggacatgtg atcaagctaacggcgcaagaggaggttgctcttgaactccgagctaatcagggagttccg attgacgtaaatcatggattcagtgttgattttgtttggaaaagtacaagctttgatcga atgcagggagcaatgaagaattttgctgtagatgaaacaagtgtgagtggttatatctac catcagttattgggacatgaagttgaggcccagatggttcgtaacacactacctcgacgt tttggggtacctggtcttccagaactgaatgcatctcaggttaatgcggtgaaaagtgtc cttcagaagcccatcagcttgatccaaggtccacctggcacaggcaaaactgtgacttct gcagcaattgtgtatcacatggcaaaacagggccagggacaggttctcgtttgtgcccca agtaatgttgctgtggaccaactagctgaaaaaattagtgctactgggttaaaggttgtt cgcctttgcgcaaaatcaagggaagctgtaagttctcctgtagagtatttgacccttcac taccaggtaagacatcttgacacatctgaaaagagcgaactgcataagttgcagcagttg aaagatgaacaaggtgagctgtcaagcagtgatgaaaagaaatacaaaaatttgaaaaga gcgacagaacgcgagataacccagagtgctgatgtcatatgctgcacatgtgttggtgct gctgatcttcggttgtcaaactttagatttagacaggtacttattgatgagtctactcaa gcaacagaacctgagtgccttatccctttggtccttggagtaaaacaggttgttcttgtt ggtgatcattgtcagcttggccccgtcattatgtgcaaaaaagcagctcgtgctggcttg gcacagtctctctttgaacgacttgtgactcttggtattaaaccaatcagattgcaggtt caatatcgtatgcatccagctttgtccgagtttccatccaacagcttctatgaaggaact ctacagaatggagtcacaattattgaaaggcaaacaacagggattgatttcccgtggcct gttcctaaccggcccatgtttttctatgttcagctgggacaagaggagatcagtgctagt ggaacatcatatcttaatagaactgaggctgctaatgtggagaaacttgtgactgctttc ttaaagagtggagttgtccccagtcagattggagttataactccatatgagggacagagg gcatacattgttaattacatggcaagaaatggttctctccgacagcaactgtacaaggaa attgaggttgccagtgttgattcttttcaaggaagggaaaaagattacatcatattgtcc tgtgtgagaagtaatgagcatcagggcattggattccttaatgatccacggaggcttaat gttgcacttacgcgagctcgttatggaattgttattcttggaaacccaaaagttcttagt aaacagcctctgtggaatggattgttgacacattacaaggaacatgagtgcttggtcgag ggacctcttaataatctaaagcagagcatggtacagtttcagaaaccaagaaagatttac aatgatcggagactattttatggtggtggagctggcatgattggaaatgataattttggt tcgggtaaccctaatgctgacagaagaggcagtcgaggaagggctggtggttcctatctt ccttctggcccacctaatggtgctagacctggactacacccggcagggtacccgatacct agggttccactttcaccctttcctggtggtcctccttctcagccatacgctattccaact cgtggacctgttggtgctgttcctcatgctcctcaacctggaaaccatggttttggagct ggtcgtggaacttcagttggggggcaccttccgcaccaacaagccacccaacataatgtt ggaactattggccctagtttaaactttccccttgatagtccgaatagccagccttcacct ggtggtccgctatcccaacctggatatggtagccaagcgttcagggatggattttctatg ggtggaatatctcaggatttcttggctgatgatatcaagagccagggatctcatgatcct tacaacatggccgactttgctacacaggcctcaccgggtggatttgctgttgattatgcc acacaaggagcacatggggcgtttcctggaaactttatgaatcagaattctcaaggcggt tattctcgtttcagcggaattaatgatttcatgtctcaggagtatatggcacatggaggt caaggtcttttcacccaagctggctttatcgactcatcccaggatgatggacagcagaat ccttatggtgtgaacaatccaaatcttcagtctcagggtctcccaaattcgctctactcg cagccattcgcacactacaacacacagccactaaacctttcaggcccacagcaatctcaa cctaaccagagctcacaaaacccaaaacatccttacaatggctga

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