Arabidopsis thaliana (thale cress): AT5G47480
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Entry
AT5G47480 CDS
T00041
Name
(RefSeq) RGPR-like protein
KO
K20353
COPII coat assembly protein SEC16
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ath04131
]
AT5G47480
Membrane trafficking [BR:
ath04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
AT5G47480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
834798
NCBI-ProteinID:
NP_199559
TAIR:
AT5G47480
UniProt:
Q9FGK9
LinkDB
All DBs
Position
5:19257027..19263425
Genome browser
AA seq
1350 aa
AA seq
DB search
MASTADFLLDDQTDEDFFDKLVDDSYTPTASSSAKELKFDDGSDSDDAKAFANLSVVDDV
LGDGDVALNEAGLGNDVANEGTSGSVGKEEPSSSIAPEAVQFVNSDANRLRDVDVVRSEV
DDMALTETGKESNIVDGSGSPGVKEVDWGSFYADSSVNDGGGFGSYSDFFTELDATAGNV
QGQAEVAVATGGNLVANDTINTSVGLDNSAGFEQHQGQVQHDSGSGQYVDNSQSWENLYP
GWKYDASTGQWYQVDGQDATVNSQESYINSTGNWESVAADNSDVAYLKQSTTSAMAGTAE
SVSTWNQVSQVGNGYPEHMVFDAQYPGWYYDTIAQEWRSLDSYNQASQTTVTGQAHDQQV
QNGHARTTTYHNNSQSSVYDVNNKNQTFKAQDFAIQGQHGSWDESYYANNQQAGNTWQPV
NVGKAEPAVTSDSLSRFGGNQQVNNLYSTESVAEQFKPNTIGAQSFIPQHMNVASATQNG
PLSFSNDLYNRQQSVDHAQKSFQNNQLFSPSVGRSSDRRPPHALVSFGFGGKLIVMKDNN
GSLQNTSFGSQGIGGSSITVLNLAEVISGSASYSSPGEDSLSYFRCLHQQSLPGPLVGGN
VGSKELHKWIDERLLHCESSNMDFSRGKLLKMLLSLLRISCQYYGKLRSPFGSDASQKET
DTPEAAVAKLFAFAKKDGIQNGYAPISQCLQHLPPESQMQVTASEVQNLLASGRKMEALQ
CAQEGHLWGPALVIAAQLGDQFYVDTVKQMALRQLIPGSPLRTLCLLVAGQPAEVCPTGS
SSSMLDNWEENLGIITANRTTDDDLVIIHLGDSMWKERGEIIAAHICYLIADKNFDPYSE
SARLCLVGADHWKCPRTYASPDAIQRTELYEYSKTLGNSQYILLPFQPYKIIYAHMLAEV
GKLSTAQKYCQAVIRCLKTSRSSEVEMWKQFASSLEERIRSHQEGGNLAPAKLVGKLLNS
LWGMPPPAPHSTTGNPQVNEYQHQQQEAAKLSYSQSANTMSSLMPPASIEPVHEWGGNGR
TMAAHSRSVSEPDFSRTPIQDQTDSSKDKAPDGVTQVKSTRKVPSSRFSRFGIGILKNTV
GKVFPSRSSNEAKLGNENQFYYDDNLKRWVERGVEPPAEEAALPPPPTSVPFRSNSLGHE
NKSEIKNEMSPSSGSWSSGSPTPSENSPGIPPVSQGSNQFSARGRMGVRARYVDTYNQGS
SSMYQSPPVQSSKPPIPAKAKFFVPAAPASFANDQVMESVSAETRQENSGDEAVVGSAGA
PGPSQASFQSPTPSPIAMQRFPSVDNIRRSGSGTSLNGDLPQSVSRRTASWSGSVNSSSF
MSPTSASTFRPSPLNSSSSSLGEELQEVEL
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgactgctgatttcctcctggatgatcaaacggacgaggatttcttcgacaaa
cttgttgatgattcctatactcctaccgcttcatcctctgccaaggagctgaaattcgat
gacggtagtgattccgatgacgccaaagcttttgctaatctctccgtcgttgacgatgtt
ttgggtgatggagatgtcgcattgaatgaagcaggtttggggaacgatgttgcaaacgag
ggtacaagtggttcggtgggaaaagaagagccttcttcatctattgctccggaagctgtt
caatttgtcaacagtgatgcaaataggttaagggatgttgatgtggtgcgatcggaggtg
gatgatatggcactaactgaaacaggaaaagagagtaatatagtcgatggatctgggagt
cctggggttaaggaggttgactggggctcgttttatgcagattcatctgtaaatgacggt
ggtgggtttggttcatactctgatttcttcactgagttggatgcaactgcaggaaatgta
cagggacaggcggaggtagctgtggccactggaggaaacttagtagccaatgatacaatt
aacacaagtgttggtttagataattcggcaggctttgagcaacaccagggtcaagtgcaa
cacgattctggaagcgggcagtatgtggataacagtcaatcttgggaaaatctctatcct
ggatggaaatatgatgcaagtactggtcaatggtatcaagttgatggtcaggatgcaacc
gttaattcacaggagagctatattaactcaacaggtaactgggaaagcgttgctgctgat
aactcggatgttgcttatctgaaacagagtacaacatctgcaatggctggcacagctgag
agtgtgtctacatggaaccaggtttcacaagtgggcaatggatatccagaacacatggta
tttgacgcccagtatcctggatggtactatgacacaattgctcaagaatggcgctctctg
gacagctacaaccaggcttcccaaacaactgtaactggtcaagctcatgatcagcaagtt
cagaacggtcatgctcgtacaactacgtatcacaataatagccagagtagtgtgtatgat
gttaacaacaaaaaccagacattcaaagcgcaagactttgctattcagggccaacacgga
agttgggacgaatcttactatgccaacaatcagcaggctggaaacacttggcaaccagta
aatgtaggtaaggctgagcctgcggtaacttctgattcattatcacgcttcggaggaaac
cagcaagtaaataatttgtacagtacagaatctgtggctgaacagtttaagccaaatacg
attggagcccagagctttatccctcagcatatgaatgtggctagtgccacacaaaatgga
ccattgagtttctcaaacgatttgtataatagacagcaatcggtagatcatgctcaaaag
tcttttcagaacaatcagcttttctccccaagtgtgggaagatcatctgataggcgtcca
ccacacgcactagtcagttttggatttggtgggaagctcattgttatgaaggataataat
ggttctctgcagaatacatcatttgggagtcaggggattgggggaagctccatcactgtc
ttaaacttggcagaagttatttctgggagtgcctcttattccagtcccggggaagactct
ttgagctactttcgttgtctgcatcaacaatctcttccaggccctttggtagggggaaat
gttggaagtaaagagttgcataagtggattgatgagagactcttgcattgtgaatcttcc
aacatggatttttcaagagggaaactcttaaagatgcttctttctttgctcagaatatct
tgtcagtattatgggaaactccgatctccttttggctctgatgcatcgcaaaaggaaacg
gatactccagaagcagcagttgctaaactttttgcatttgccaagaaagatggcatccaa
aatggttatgctcctattagccaatgcttgcagcatttaccacctgaatcgcaaatgcaa
gtaactgcttcagaggttcagaatcttctggcttctggtagaaaaatggaggctctacaa
tgtgcgcaagaaggccatttatggggaccggcacttgtcatcgcggctcaacttggggat
cagttctatgtagacactgtgaaacaaatggcccttcgccagctgatacccgggtcacct
ttacggacattgtgcctactcgttgcgggacaaccagctgaagtgtgtcccactggaagt
agtagtagcatgcttgacaattgggaagagaatttgggtataataactgctaacagaacc
acagatgacgaccttgtgattattcatcttggagatagcatgtggaaagaaagaggggag
ataattgcggcgcatatttgctatttaatcgcagacaagaactttgatccatactcagaa
agcgccagactctgccttgtcggagcggaccattggaaatgtcctcgaacatacgcaagt
ccagatgctatacagagaacagagttatatgaatactctaagacgctgggaaactctcag
tatatcctgttaccgtttcaaccatataaaatcatatatgctcatatgctggctgaagtt
ggtaaactttctactgcacaaaagtactgtcaagcagtaataagatgcctcaagactagc
cgatcatctgaagtagaaatgtggaagcagtttgcttcatctcttgaagagagaatccgt
agccatcaagagggtgggaatttggccccagcaaaacttgttggaaagctgctgaactct
ttgtgggggatgccaccacctgcaccacattcaacaactggaaacccgcaggtaaatgag
tatcaacatcaacagcaggaagcggctaagttatcatatagtcaatccgctaatacaatg
tcatcattgatgccacctgcttcaattgaacccgtacatgagtggggtgggaacgggagg
acaatggcagcacattctagaagtgtatcagagccagatttcagtaggacgccaatacag
gatcagactgactcctcaaaagacaaagctcctgatggggtgacacaggtgaaatcaact
cggaaggtgccaagttctcggtttagccgctttggtattggcatattgaagaacactgta
gggaaggtcttcccatctcgatcatctaatgaggcaaaactgggtaatgagaatcaattc
tactatgacgataacctaaagagatgggtggaaagaggtgtggaacccccagctgaggaa
gctgcactacctcctcctccaacgtcagtcccattccgaagcaactcattgggtcatgaa
aacaagtctgagataaagaacgagatgtctccatctagtgggagctggagtagtggcagc
ccaactccgtcagagaattctccgggaatcccaccagtctcacagggctcaaaccaattc
tcagctcgtggacgtatgggtgtgcgtgcaaggtacgttgacacctataatcaaggctcc
tcgagcatgtatcagtcacctcccgtgcaatcttctaaaccaccgattcctgcgaaagca
aaattctttgtcccagcagcaccggcatcgtttgcaaacgaccaggtaatggaatcggtt
agtgctgaaaccagacaagagaactcaggagatgaagcagtagtaggctctgcaggcgct
ccaggaccaagccaggcttcattccagtccccgacaccatctccaattgcaatgcagaga
tttccaagtgtagacaacatcagaagaagtggatcaggaacaagccttaatggtgatctt
cctcagtcagtatcaagaagaacagcttcatggagcggaagcgtcaacagctcgtcgttt
atgtctccaacgagtgcatcaacattcagaccaagcccactgaacagtagcagtagcagc
ttaggagaggagcttcaggaagttgaactgtaa
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