Arabidopsis thaliana (thale cress): AT5G47620
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Entry
AT5G47620 CDS
T00041
Name
(RefSeq) RNA-binding (RRM/RBD/RNP motifs) family protein
KO
K14411
RNA-binding protein Musashi
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AT5G47620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G47620
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
AT5G47620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Sec3_C_2
RRM_PARP14_1
Motif
Other DBs
NCBI-GeneID:
834812
NCBI-ProteinID:
NP_001190485
TAIR:
AT5G47620
UniProt:
F4JYK6
LinkDB
All DBs
Position
5:complement(19302190..19304950)
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AA seq
453 aa
AA seq
DB search
MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA
ERVVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQG
SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE
AVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSP
SPISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFEPNQTQNYGSGSSGGFGRPFSPG
YAASLGRFGSQMESGGASVGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNSGMSS
LGSIGDNWGTVARARSSYHGERGGVGLEAMRGVHVGGYSSGSSILEADSLYSDSMWLSLP
AKAEEGLGMGPLDFMSRGPAGYINRQPNGGIAA
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggaatcatgtaagctcttcatcggtggtatatcttgggaaaccagtgaagat
cgtcttcgtgactattttcacagttttggtgaggttttagaggctgttattatgaaggat
cgtgccactggccgtgctcgtggctttggtttcgttgtctttgctgatcctaatgttgct
gaaagagtcgtcttgcttaaacatatcattgatggtaaaattttagtagactctattgtt
tacaatcagctttgccgctctgataaatgcatatctttgtcagaagttgttgaggcaaag
aaggctgttccaagagatgatcacgtagtatttaataaaagtaacagcagccttcaggga
tcacctggcccatcaaactccaagaagatctttgtgggaggtttggcatcatccgtgaca
gaggctgagttcaaaaagtattttgctcagtttgggatgatcactgatgttgtggtgatg
tatgaccacagaacccagcggcctagaggctttgggttcatttcatatgactctgaggaa
gctgttgacaaagtactgcagaagacattccacgaactcaatggtaagatggtggaggtc
aaactggctgttcctaaggatatggctctcaacacaatgcggaaccaaatgaatgtaaat
agctttggcactagtagaatcagttcattactgaatgagtacacccagggattcagcccg
agtccaatctctggttatggagtgaaacctgaagttaggtacagtccagcagtaggtaat
aggggaggattctcaccgtttggacatggatacggaatcgagctgaattttgagccaaac
cagactcagaactacggttctggttccagtggaggctttggacgaccctttagccctgga
tatgctgcgagtctcggcaggttcggtagccaaatggagtcgggaggagctagtgttggg
aacggttctgtcctaaatgcagcaccaaagaaccatttatggggaaatggtggtctaggt
tacatgtcaaactctccgatatcaagaagcagcttcagtggaaactctggaatgtcttca
ctaggcagcattggtgacaactggggaacagttgcacgtgcacgcagtagctaccacggt
gagagaggaggtgtaggattagaagcaatgagaggagttcatgttggtggttacagcagc
ggctcaagcatcttggaggcagactctctgtacagcgactcgatgtggctttcgctgcct
gcaaaggcagaggaaggattgggaatgggaccattggacttcatgtctagaggaccagct
ggatacatcaacaggcaaccaaacggaggaattgcagcttag
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