Arabidopsis thaliana (thale cress): AT5G48870
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Entry
AT5G48870 CDS
T00041
Symbol
SAD1
Name
(RefSeq) Small nuclear ribonucleoprotein family protein
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT5G48870 (SAD1)
09123 Folding, sorting and degradation
03018 RNA degradation
AT5G48870 (SAD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G48870 (SAD1)
03041 Spliceosome [BR:
ath03041
]
AT5G48870 (SAD1)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT5G48870 (SAD1)
mRNA degradation factors
5'-3' decay
Lsm complex
AT5G48870 (SAD1)
Spliceosome [BR:
ath03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
AT5G48870 (SAD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
SM-ATX
Swm2
Motif
Other DBs
NCBI-GeneID:
834945
NCBI-ProteinID:
NP_199698
TAIR:
AT5G48870
UniProt:
Q9FKB0
A0A178USD1
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All DBs
Position
5:19813346..19814554
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AA seq
88 aa
AA seq
DB search
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR
RVTKLDQILLNGNNIAILVPGGSPEDGE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacaatccttcacagcttcttccttcagagctaatcgataggtgtatagggtct
aagatttgggtgataatgaaaggagataaggagctcgttggtattctcaaaggattcgat
gtttatgtcaacatggttcttgaagatgtcaccgaatatgagattacggcagaaggaaga
cgggtcacaaagcttgatcagattctactcaatggcaacaacatcgccattctggtgcca
ggtgggtctcccgaagatggagaatga
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