Arabidopsis thaliana (thale cress): AT5G50230
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Entry
AT5G50230 CDS
T00041
Name
(RefSeq) Transducin/WD40 repeat-like superfamily protein
KO
K17890
autophagy-related protein 16-1
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
AT5G50230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ath04131
]
AT5G50230
03029 Mitochondrial biogenesis [BR:
ath03029
]
AT5G50230
Membrane trafficking [BR:
ath04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
AT5G50230
Others
Specific organelles associated proteins
Auto phagosome
AT5G50230
Mitochondrial biogenesis [BR:
ath03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
AT5G50230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_Gbeta
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
ATG16
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR41
WDR90_beta-prop_4th
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_NWD2_C
WD40_MABP1-WDR62_1st
Beta-prop_VPS8
Beta-prop_Aladin
Beta-prop_ACSF4
Beta-prop_IFT140_1st
Beta-prop_SPT8
WDR54
Beta-prop_HPS5
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_Nup120_160
WD40_RFWD3
Tricorn_2nd
Beta-prop_EIPR1
PQQ_2
Beta-prop_RIG_1st
Cytochrom_D1
WD_LRWD1
HAP1_N
BRE1B
INO80E
Motif
Other DBs
NCBI-GeneID:
835088
NCBI-ProteinID:
NP_199834
TAIR:
AT5G50230
UniProt:
Q6NNP0
LinkDB
All DBs
Position
5:complement(20448310..20451062)
Genome browser
AA seq
509 aa
AA seq
DB search
MVQEEKAMEAINDALRALRKRHLLEEGAHAPAISALSKPLISQGSEWKEKTEKLETELQQ
CYKAQSRLSEQLVIEVAESRTSKAILQEKELLINDLQKELTQRREDCTRLQEELEEKTKT
VDVLIAENLEIRSQLEEMTSRVQKAETENKMLIDRWMLQKMQDAERLNEANDLYEEMLAK
LKANGLETLARQQVDGIVRRNEDGTDHFVESTIPSTCANRIHAHEGGCGSIVFEYNSGTL
FTGGQDRAVKMWDTNSGTLIKSLYGSLGNILDMAVTHDNKSVIAATSSNNLFVWDVSSGR
VRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHKGYCTNTVLFTSNCNAICLS
IDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNRILTSGRDNVHNVF
DTRTLEICGTLRASGNRLASNWSRSCISPDDDYVAAGSADGSVHVWSLSKGNIVSILKEQ
TSPILCCSWSGIGKPLASADKNGYVCTWT
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggtacaggaggagaaagctatggaagcaataaatgacgctttgagagctttgcggaag
cgtcatcttctggaagaaggagctcatgctcctgcgatttctgctctctctaagccttta
atctctcagggttcagaatggaaggagaaaacagaaaagctggaaacagagttacagcaa
tgttacaaagctcaatctcgactatctgaacaactggtgatagaagtagctgaatccaga
acttcaaaggctattttacaagagaaggagttgttaattaatgacttgcagaaggaatta
acacaaagaagggaggattgtacacgattacaagaagagttagaggaaaagaccaagacg
gtggatgtacttattgctgaaaacctggaaatacggtctcagttggaggagatgacaagt
agagtgcaaaaagcagagactgagaataaaatgttaattgatcggtggatgttgcagaag
atgcaggatgcagaacgtcttaatgaggcaaatgatctctatgaagaaatgctagctaag
ctgaaggcaaatggtttggaaactcttgctcggcagcaagttgatggtattgtccgccgc
aatgaagatggaaccgatcactttgttgagtcaaccattccgtcaacatgtgcgaatcgt
atccatgctcatgaaggtggctgtggttcaatagtctttgaatacaactctggtactctg
tttactggtgggcaagatcgagcagtaaaaatgtgggacaccaatagcggaactttaatc
aaaagcttatacggttcccttgggaatatacttgatatggccgtaacccacgacaataaa
tccgtgatcgcagcaaccagctcaaataatttgtttgtatgggatgttagctcgggtagg
gtacgccatacactcacaggccacacggataaggtttgtgctgtggatgtgagcaaattc
tctagccgacatgttgtcagtgcagcatatgaccgtaccataaaactttgggatttgcat
aaaggttactgcactaacacagtactctttaccagcaactgcaatgcaatctgcctcagc
atagatgggcttacggtattctcaggccacatggatgggaatcttaggttatgggatatt
caaactgggaaacttctgtccgaagtagctggacattcttctgctgtgacctcagtatca
ttgtcccggaacggaaataggatcttgacgagcgggagagacaacgtgcataatgtattt
gatacccggactttggaaatatgtgggacactgagagcatcggggaacagattagcatcg
aattggagccggtcatgcataagtccagatgatgattatgtggctgcgggatctgcagat
ggttcggttcatgtatggtcgctatctaaaggcaatatagtgagcattctcaaggagcaa
acatctcctatactgtgttgttcttggagtgggatcgggaaaccattggcatcggctgat
aaaaacgggtacgtttgtacgtggacatga
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