Arabidopsis thaliana (thale cress): AT5G50230
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Entry
AT5G50230 CDS
T00041
Name
(RefSeq) Transducin/WD40 repeat-like superfamily protein
KO
K17890
autophagy-related protein 16-1
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
AT5G50230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ath04131
]
AT5G50230
03029 Mitochondrial biogenesis [BR:
ath03029
]
AT5G50230
Membrane trafficking [BR:
ath04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
AT5G50230
Others
Rab GTPases of specific organelles
Auto phagosome
AT5G50230
Mitochondrial biogenesis [BR:
ath03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
AT5G50230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
ANAPC4_WD40
NBCH_WD40
Nup160
PQQ_2
Cytochrom_D1
Crescentin
HAP1_N
Motif
Other DBs
NCBI-GeneID:
835088
NCBI-ProteinID:
NP_199834
TAIR:
AT5G50230
UniProt:
Q6NNP0
LinkDB
All DBs
Position
5:complement(20448310..20451062)
Genome browser
AA seq
509 aa
AA seq
DB search
MVQEEKAMEAINDALRALRKRHLLEEGAHAPAISALSKPLISQGSEWKEKTEKLETELQQ
CYKAQSRLSEQLVIEVAESRTSKAILQEKELLINDLQKELTQRREDCTRLQEELEEKTKT
VDVLIAENLEIRSQLEEMTSRVQKAETENKMLIDRWMLQKMQDAERLNEANDLYEEMLAK
LKANGLETLARQQVDGIVRRNEDGTDHFVESTIPSTCANRIHAHEGGCGSIVFEYNSGTL
FTGGQDRAVKMWDTNSGTLIKSLYGSLGNILDMAVTHDNKSVIAATSSNNLFVWDVSSGR
VRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHKGYCTNTVLFTSNCNAICLS
IDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNRILTSGRDNVHNVF
DTRTLEICGTLRASGNRLASNWSRSCISPDDDYVAAGSADGSVHVWSLSKGNIVSILKEQ
TSPILCCSWSGIGKPLASADKNGYVCTWT
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggtacaggaggagaaagctatggaagcaataaatgacgctttgagagctttgcggaag
cgtcatcttctggaagaaggagctcatgctcctgcgatttctgctctctctaagccttta
atctctcagggttcagaatggaaggagaaaacagaaaagctggaaacagagttacagcaa
tgttacaaagctcaatctcgactatctgaacaactggtgatagaagtagctgaatccaga
acttcaaaggctattttacaagagaaggagttgttaattaatgacttgcagaaggaatta
acacaaagaagggaggattgtacacgattacaagaagagttagaggaaaagaccaagacg
gtggatgtacttattgctgaaaacctggaaatacggtctcagttggaggagatgacaagt
agagtgcaaaaagcagagactgagaataaaatgttaattgatcggtggatgttgcagaag
atgcaggatgcagaacgtcttaatgaggcaaatgatctctatgaagaaatgctagctaag
ctgaaggcaaatggtttggaaactcttgctcggcagcaagttgatggtattgtccgccgc
aatgaagatggaaccgatcactttgttgagtcaaccattccgtcaacatgtgcgaatcgt
atccatgctcatgaaggtggctgtggttcaatagtctttgaatacaactctggtactctg
tttactggtgggcaagatcgagcagtaaaaatgtgggacaccaatagcggaactttaatc
aaaagcttatacggttcccttgggaatatacttgatatggccgtaacccacgacaataaa
tccgtgatcgcagcaaccagctcaaataatttgtttgtatgggatgttagctcgggtagg
gtacgccatacactcacaggccacacggataaggtttgtgctgtggatgtgagcaaattc
tctagccgacatgttgtcagtgcagcatatgaccgtaccataaaactttgggatttgcat
aaaggttactgcactaacacagtactctttaccagcaactgcaatgcaatctgcctcagc
atagatgggcttacggtattctcaggccacatggatgggaatcttaggttatgggatatt
caaactgggaaacttctgtccgaagtagctggacattcttctgctgtgacctcagtatca
ttgtcccggaacggaaataggatcttgacgagcgggagagacaacgtgcataatgtattt
gatacccggactttggaaatatgtgggacactgagagcatcggggaacagattagcatcg
aattggagccggtcatgcataagtccagatgatgattatgtggctgcgggatctgcagat
ggttcggttcatgtatggtcgctatctaaaggcaatatagtgagcattctcaaggagcaa
acatctcctatactgtgttgttcttggagtgggatcgggaaaccattggcatcggctgat
aaaaacgggtacgtttgtacgtggacatga
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integrated database retrieval system
