Arabidopsis thaliana (thale cress): AT5G52040
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Entry
AT5G52040 CDS
T00041
Symbol
RS41
Name
(RefSeq) RNA-binding (RRM/RBD/RNP motifs) family protein
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT5G52040 (RS41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT5G52040 (RS41)
Spliceosome [BR:
ath03041
]
Common components
Common spliceosomal components
SR proteins
AT5G52040 (RS41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RNA_bind
Nup35_RRM_2
RRM_5
RRM_Nup35
DUF2129
Motif
Other DBs
NCBI-GeneID:
835279
NCBI-ProteinID:
NP_851174
TAIR:
AT5G52040
UniProt:
P92966
A0A7G2FHI5
LinkDB
All DBs
Position
5:21130320..21133709
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AA seq
356 aa
AA seq
DB search
MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY
GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY
GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER
RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSP
DYKRDDRRRERVASPENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPP
PYEKRRERSRSRSKSSPENGQVESPGQIMEVEAGRGYDGADSPIRESPSRSPPAEE
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctgtcttttgcggaaactttgagtatgatgctcgtgagagtgatcttgagcgg
cttttcagaaagtacggcaaggttgagagggttgatatgaaagctgggtttgcttttgtc
tatatggaagatgaaagggatgctgaagatgcaattcgagcgcttgatcgctttgaatat
ggtcgcacaggacgcagactccgtgttgagtggacaaagaatgaccgtggaggtgctgga
agatcaggtggttcgaggagatcatcttctggcttgagaccttccaagactctgtttgtg
atcaacttcgatgcacaaaacactaggactcgggacttggagaggcactttgagccgtat
ggtaaaattgttaatgttagaatcagaaggaattttgcattcatccaatatgaggcacaa
gaagatgctaccagagcactggatgctacaaattccagtaagctgatggataaggtgatc
tcagtggagtatgcagtgaaagatgatgattcaagaggaaatggatacagtcctgaaaga
cggcgtgataggtcacctgataggagaaggcgatcaccaagtccttacagaagagaaagg
ggaagtcctgactatggccgaggtgctagtccagtagctcacaaaagggaaaggactagt
cctgattatggtcgtggaagacgcagccccagcccttacaagagagccaggcttagccca
gattacaagagggatgaccgtaggagggagagagtggctagcccagagaatggagctgta
aggaaccgaagcccaagaaaaggacgtggtgaaagcaggagtcctcctccatatgagaag
aggagggaaagcaggagtcctccgccatatgagaagagaagggaaagcaggagtcctcct
ccatatgagaagaggagggagaggtcaaggtcaaggtcgaagtcaagccctgagaatggt
caagttgagagccctgggcaaataatggaagtagaagctggaagaggatacgatggagca
gacagcccgatacgcgagagcccctctcgttcgccgccagcagaggaatga
DBGET
integrated database retrieval system
