Arabidopsis thaliana (thale cress): AT5G52290 Help Entry AT5G52290         CDS       T00041                                  Symbol SHOC1 Name (RefSeq) shortage in chiasmata 1   KO K28108   shortage in chiasmata 1 Organism ath  Arabidopsis thaliana (thale cress) Brite KEGG Orthology (KO) [BR:ath00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03036 Chromosome and associated proteins [BR:ath03036]     AT5G52290 (SHOC1) Chromosome and associated proteins [BR:ath03036]  Eukaryotic type   Meiosis-specific proteins    Others     AT5G52290 (SHOC1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Other DBs NCBI-GeneID:  835305 NCBI-ProteinID:  NP_200042 TAIR:  AT5G52290 UniProt:  F4KG50 LinkDB All DBs Position 5:complement(21230224..21236554) Genome browser AA seq 1594 aa AA seqDB search MRTRFLNIDYFSTPPSHVFETLGFLNLPAPDNFPAPIVYNGEEDRLRFGSIENVSIPIGN LPIEAALSKFLSDVVPDRVSVDYRVFEIDDSSLGVYYSDEKDDGDAIADKATPKIIELET PELDFEMENKLLCTSEDHLQCFSEVLEIKNDPVKYEGSDIILQNSKDIQEQIYSVDYIPS DYFTENNTSVAENECFRKIQPWFKDARFPLLEVDEVNLSELSSLSVLDKVFTVLETIEPQ DTNAGSSLIINSKELIGSKDYDLLDVLSTDCYLNKSGQSDVVPEDEFSEMDIVTILEISN AEEFQGKVAVPVTYEEFQILDVDISDVFDIFLCLQKAIEPEICYGMFSKEMNFKDFDELV VSSELAFTDDAFKSLPTPILHDYEMTRSLELIYEDVLSKIKPQSLSASNDIYLPWNLLEE RNHNHCDYPFEEIVTFNIDYNWEASEGDKWVYDFIFSEDAFCEPLVEKCTEPFYGISNLD EHAPVNTSHGLLENPFQKTGARDCAVDDNAKKATLLFKSMSAFDDLTFFMDPKKAVIEDN LESRVEAAKTTNHKCMSIDSKASCRSGGMHPNPKTEEMILHSVRPSENIQALVGEFVKSY LTLVKDESENLSEDKLKLLSISKGKLIDCIRKANVHKTQLADDKTFTFALLLAIKQMTWY MCFFGIHVAYIYLNKVCRSSNPMKIGLHTLYSAVETEHKSDETDITRSHPSLAVIQGILQ SEFARGNSKALLLAEKVFWSSLKRLLMSMGLSYNDLNSPSPSGNRPNVHEAIELGFLPIS DCLIISYEQISPSFPVENFSVIVEYGGPNASPRYSFPSKLDSFPSFHFIKVELDMPSACG QLCAGVTVPYSLKMIKGDEVETKTGWLEEVLNFVPLEKVCYAGSSETTNESEFISMPQES ERKRGIIEQGLSDQRSVIVVNTKTVDKEMIISRRSTYQKVLAMEKEGVQVVERDSDLPVD LMLSPAVCLLWYDSETVSKKSAATIGTSSSSLSWIGDIATNVLTSLSFSFSTCIMVFEGE PAFLAAVMDSSDELYAAAGSLGISLQMFCSSSANLTDEIILKCIKSSVKLSKLHVKMPES ESLAESFLTKFPSVNPLTAQVILSSSGSLLEFMKLPHKSKVERTQKYHVPEESVDLFSSV CRYGAREDSRSVMTDSSSSVSSGPDSDTHHVSVHSGSKKKQYIAEKDEIDMDDLVHFSPS IEFADTQLKSSGDFQLDDSWSSKDHEIFHFDPVTEFSDAPFKPSGISHPNDSWPSKDPER FDKKSGPGSSSKDTFWEKDQPDFSVEDSLPGIPELEDWSFPVKDKFMSQNRGCKFPVMRD FNLHDNRNSENFIADYKGEVIDRADKYLEEDFPPSPGYNRFARIVSDVNEEELPRKSKSS RKLSFFGSLQPNFPKAADIDSSSERYATEKDSKYDNNTSLRGYADNYPAKRQRTLLEEVL TRRSAVPTTELPFREEISHFGGSPLSNAIRSSNQVQSSPWTVDFLNRVRERSRARKQQQS LPSYASPPSLETPGNIKKANTKRKSPSILEFFKYKGGNKLQEEKRQKRSKNSSASPKNER FYSPLKSCTPIDKRAKQSLSYTANGTGQTKLVWK NT seq 4785 nt NT seq  +upstreamnt  +downstreamnt atgcgaactcgatttctcaacatcgattacttctctactccaccttctcacgtatttgaa accctaggcttcctcaatcttccggctcctgataatttcccggcacccatcgtctacaac ggagaagaagaccgtctccgatttggctcgatcgaaaatgttagtatccctatcggaaat ttgcctattgaagctgctttgtcgaagttcctttccgacgtggttcccgaccgcgtcagt gtggactatcgagtttttgaaatcgacgactcttcgctcggagtttattactcagacgag aaggatgacggagatgccattgcggataaagctacacctaaaattattgagttggagact ccagagttggattttgagatggagaacaagctcttatgcacgagtgaggatcatctccaa tgtttctctgaagttctagagatcaaaaatgacccggttaaatatgaggggtcagatatt atcctgcagaactcaaaggacattcaagagcagatttattctgttgattacattccttct gattactttacagagaacaacacttctgtagcagaaaatgaatgcttccgcaagattcaa ccatggttcaaagatgccagatttccccttctagaagtggatgaagtaaacttgagcgaa ctatcaagcttatctgtgcttgataaagtatttactgttcttgagacgattgaaccccaa gacactaatgcagggagttctctcattatcaattctaaggagcttataggctcaaaggat tatgatctattggatgtactctctacggattgctatttgaacaagagtggccaatctgat gtggtaccagaggatgaattttctgaaatggatatagtgactatcctggaaatatcaaat gctgaggaatttcagggaaaggtggctgtaccagtaacttatgaggaattccagatcctg gatgtggatatctctgatgtttttgatatcttcctttgtcttcaaaaagccattgaacca gaaatctgttacggtatgttcagtaaagagatgaacttcaaggatttcgatgaattagtt gtcagttccgaacttgccttcacagatgatgccttcaagtctttgcctactcctatttta catgattatgagatgacaagatctctggagctcatttatgaggatgttttgtcaaagatc aagcctcaatccttgtctgcctcaaatgacatatacttgccgtggaaccttcttgaggaa agaaaccacaaccattgtgattatccgtttgaagaaatagttacattcaacattgattat aactgggaagcttcagaaggagacaaatgggtttatgatttcattttctctgaagatgct ttctgcgagccacttgtagagaaatgcactgaacctttctatggtatatctaaccttgat gagcatgctcctgttaatacttcgcatgggttattggaaaaccctttccaaaaaacagga gcaagggattgtgcagtggatgataatgctaagaaggctacgctgttgttcaaatcaatg tctgcttttgatgacttaacctttttcatggatccgaagaaggctgtgattgaagataat ctcgagtctagagtcgaagctgctaagactaccaaccataaatgtatgtctattgactcg aaggcttcatgtagatctggtggtatgcacccaaacccgaagacagaggaaatgatactt cacagtgtgcgcccttcagaaaatattcaggctcttgttggggaatttgtgaagagctat ttaactcttgtgaaggatgaatcagagaatttatcagaagataaacttaagttactcagc atatctaaaggaaagcttattgactgcataagaaaggcaaatgtccacaaaacacagttg gcggatgataagactttcacgtttgcattactattagcaattaaacagatgacatggtat atgtgtttcttcggtatccatgtggcatatatctatcttaacaaggtatgtcgaagctca aatcccatgaagataggattgcacaccctctactcagcagttgaaacagaacacaaatca gatgagacagacatcacaagatcacatccatcactagctgttatccaggggattttacag tcagaatttgcccgggggaactccaaagcattacttttggctgagaaagtgttttggtcc tcgctgaagaggctactgatgtccatggggttatcttacaatgacctcaacagtccctcc ccaagtggaaatcgaccaaatgttcatgaagccatagaacttggtttcctgccgatttca gactgtctaattatctcttacgagcaaatttctccatcttttcctgtggagaatttcagc gtcattgtagaatatggaggtccaaatgcctcgcccagatattcttttccttcaaagttg gattcctttccttcctttcatttcataaaagtggagctggatatgcccagtgcatgcggg caactctgtgcaggtgttacagtaccttatagtctcaaaatgataaagggagacgaagtt gagacgaaaactgggtggttggaagaagtgttgaactttgttccacttgaaaaagtgtgt tatgcaggatcttccgaaaccacaaatgaatctgaatttatctccatgcctcaagaatct gaaagaaaacgtgggataattgaacagggtctctctgaccaaagatctgtgattgttgtg aacacaaaaactgtcgataaggagatgatcatatccagaagaagtacataccagaaggtg ttagcaatggaaaaagaaggagtgcaagttgtggagcgcgattcagatctacctgtggac ctgatgttaagtcctgcagtttgcctactctggtatgatagtgaaactgttagtaagaag tcggctgcaactattggtacttcctcaagttcactttcatggattggagatatcgcaact aatgttttgacgtcattgagtttcagtttcagcacttgcattatggtttttgagggggaa cccgccttcctggctgccgtaatggactcctctgatgaactgtatgcagcagctggtagc ctaggaatcagtttacagatgttttgctcatcgtcagctaatctcacggatgaaattata ttgaagtgtatcaaatcttctgttaagttgtccaaactccatgtcaaaatgcccgagtca gaatctctagcagaatcatttctcaccaagtttccttccgtgaatccactcacagctcaa gtaattctgtcatcttctgggtcacttctcgaattcatgaagctcccacataaaagcaag gttgaaaggacgcaaaagtatcatgtacctgaagagagtgttgatctattcagttcagta tgcagatacggagcaagggaggactccagatctgtaatgacagacagctcttcttcggta tcttctggacctgactcagacacacaccatgtcagtgtccattctggctcaaaaaagaaa cagtacattgctgagaaagatgagatagatatggacgacttggtgcatttttctccctcg atagaatttgctgatacacagctcaagtcttctggggatttccaacttgatgattcttgg tcatcgaaagatcatgagatctttcattttgaccctgtcactgaattctcagatgcacct ttcaaaccttctgggatcagtcatcccaatgactcttggccgtctaaagatcctgagaga tttgacaagaagtcaggacctggttcatcatcaaaggacacattttgggagaaagatcag cctgatttttcagtggaggacagtcttcctggaattcctgaattagaagattggagtttc ccagttaaagacaaattcatgagccagaacagaggatgtaaatttccggtgatgagagat tttaacttgcatgacaataggaactcggagaatttcatcgcagactacaaaggtgaagta attgacagagctgataagtatctcgaggaagacttcccgccttctcctggttataatagg tttgctcgaatagtttctgatgttaatgaagaggaacttccaagaaaatcaaaatcttca aggaagttatctttctttggatctctccagcctaacttcccaaaggcggctgacatcgac tcgagttctgaaagatacgccactgagaaagattcaaaatatgataacaacacttctttg cgtggctatgctgataactatccagcaaaacgccaaaggacccttttggaggaggtctta acacgaagatctgcagttccaacaacagagcttccatttagagaagaaatatcacatttt ggtggatctccactatcaaacgcaatccgttcttcaaatcaagtacaaagttctccttgg acggttgatttccttaacagagttcgagaaagaagcagagcaaggaaacaacaacaatct cttccttcttatgcttctccacctagtttggagactccagggaacataaagaaagctaat accaagagaaagagtccatccatactcgagtttttcaagtataaaggaggcaacaaactt caagaagagaagaggcagaagcggtcaaagaattcttcagcctcaccaaaaaacgagaga ttttactcgcctcttaagtcatgcacaccaattgataagcgagcaaaacagtctctatct tacacagcgaatggaactggccaaacaaaacttgtatggaagtaa

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