Arabidopsis thaliana (thale cress): AT5G55720
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Entry
AT5G55720 CDS
T00041
Name
(RefSeq) Pectin lyase-like superfamily protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00040
Pentose and glucuronate interconversions
ath01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AT5G55720
Enzymes [BR:
ath01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
AT5G55720
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
835666
NCBI-ProteinID:
NP_200383
TAIR:
AT5G55720
UniProt:
Q9FM66
A0A7G2FJI8
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All DBs
Position
5:22555995..22557725
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AA seq
392 aa
AA seq
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MSIVCTFFLFLLNTSFAFAFAIPKPPIVRRLSTTVTSNSTASSCSANGNPIDECWRCDEN
WKDNRKNLADCAVGFGRDSIGGRAGEFYTVTDSGDDNPLNPTPGTLRYAATQDQPLWIIF
DRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNIIINNLYIHDCVPVKRNA
LSSLGGYSDGDGISIFESRDIWIDHCTLEKCYDGLIDAVNGSTDITISNSYMLNHNEVML
LGHSDEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIVNNIYRDWKMYAIGGSANPT
IFSQGNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEGDEMVNGAFFTPSGKEDSPSY
AKFSSMVARPASLLKTTHPSVGVLSCEIDQAC
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattgtatgtacgtttttcttgtttctcttaaacacttcttttgcgtttgcattt
gcgattcctaaaccgccaatagtaaggagactatcaacgacagtgacatcaaattcaaca
gcgtcttcttgctcagccaatggaaatccaatcgatgagtgttggagatgcgacgaaaac
tggaaggacaaccgcaaaaacctcgcggattgcgcggttggattcggacgcgactcaatt
ggcggtagagccggggagttctacacggtgactgattcaggagacgacaatcctctaaat
ccaactccaggtacattacggtacgctgcgacacaagatcaacctctatggatcattttt
gatcgagacatggtaatacaactaaaacaagatcttcaagtagcttcatacaaaaccatt
gatggtagaggaaataacgtacaaatagcttatggaccgtgtttaactttatataaagtt
agtaacattattataaacaatctttatattcacgattgtgttcccgtgaaacggaatgct
ttatcgtcgttgggaggatactcggatggagatggaatatcgatattcgagtctcgagat
atttggattgatcattgtacgttagagaaatgttacgatgggcttattgatgcggtgaat
ggatccacggatataacgatttcgaatagttacatgttgaatcataatgaagtcatgctt
ttgggccatagtgatgagtattccggtgatcgggatatgcgagttacgatcgcgtttaac
tattttggtgaaggacttgtccaaagaatgccaaggtgtaggcatggatattttcacata
gtgaataacatttatagagactggaagatgtatgctattggtggaagtgctaatccaacg
atctttagccaaggaaatgttttcatagcttccaataatcagttcaccaaggaggttaca
aagcgagagagtgcagatggagacgaagaatggaaggaatggaactggaaatcagaagga
gacgaaatggttaacggagctttctttacaccgtcagggaaagaggattctccgagctac
gcgaaattttcgagtatggtagctcgaccagcttcacttctcaagaccacacatccatca
gtaggtgttcttagttgcgaaattgaccaagcttgttaa
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