Arabidopsis thaliana (thale cress): AT5G58760
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Entry
AT5G58760 CDS
T00041
Symbol
DDB2
Name
(RefSeq) damaged DNA binding 2
KO
K10140
DNA damage-binding protein 2
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03420
Nucleotide excision repair
ath04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
AT5G58760 (DDB2)
09124 Replication and repair
03420 Nucleotide excision repair
AT5G58760 (DDB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ath04121
]
AT5G58760 (DDB2)
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT5G58760 (DDB2)
Ubiquitin system [BR:
ath04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
AT5G58760 (DDB2)
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
AT5G58760 (DDB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
835990
NCBI-ProteinID:
NP_200684
TAIR:
AT5G58760
UniProt:
Q6NQ88
A0A5S9YHN1
LinkDB
All DBs
Position
5:complement(23730450..23733707)
Genome browser
AA seq
557 aa
AA seq
DB search
MSSTRSRRKRDPEIVIARDTDSELSSSEEEEEEEDNYPFSESEEEDEAVKNGGKIELEKN
KAKGKAPITVKLIKKVCKVCKQPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPHRVV
TDHGILPTSHRNTKNPIDFVFKRQLQPRIPPIKPKYVIPDQVHCAVIRYHSRRVTCLEFH
PTKNNILLSGDKKGQIGVWDFGKVYEKNVYGNIHSVQVNNMRFSPTNDDMVYSASSDGTI
GYTDLETGTSSTLLNLNPDGWQGANSWKMLYGMDINSEKGVVLAADNFGFLHMIDHRTNN
STGEPILIHKQGSKVCGLDCNPVQPELLLSCGNDHFARIWDMRKLQPKASLHDLAHKRVV
NSAYFSPSSGTKILTTCQDNRIRIWDSIFGNLDLPSREIVHSNDFNRHLTPFKAEWDPKD
TSESLIVIGRYISENYNGTALHPIDFIDASNGQLVAEVMDPNITTITPVNKLHPRDDVLA
SGSSRSLFIWRPQDNTEMVEEKKDKKIIICYGDSKKKGKKQKRGSDDEDDEDDIFSSKGK
NIKVNKYQAKTTKKTKT
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaacgaggagcagaagaaaaagggacccagaaatcgtcatcgctagagataca
gattccgagttaagttcgtcagaagaagaagaagaagaggaagataattaccctttctcg
gagtcggaggaggaagatgaagcggttaaaaatggagggaaaattgaattggagaagaat
aaagccaaagggaaagcacccattaccgttaagcttattaagaaagtttgcaaagtttgt
aaacagcctggccatgaagctggatttaaaggagcaacgtatatcgattgtcctatgaag
ccttgcttcttgtgtaaaatgcctggccacaccacaatgtcctgtcctcatagagtggtt
actgaccacggaatactcccaacttctcataggaatacaaagaaccctattgactttgtg
ttcaagcgccaactccaaccgagaattcctcctattaaaccaaaatatgtgatcccggat
caagttcattgtgcagttattagataccacagcagacgtgttacatgtttggagttccat
ccaacaaagaacaacattcttctctctggagataagaaagggcaaattggagtctgggat
tttggaaaagtgtatgagaagaatgtgtatggaaacatacattctgttcaagttaataat
atgcggtttagtcccacaaatgatgacatggtttattctgcatcctctgatggaacaatt
ggttatactgacctggaaactggaacttcatcaactttgctgaatctcaaccctgatgga
tggcagggcgcaaacagttggaaaatgctgtacggtatggatataaactcggagaaaggt
gtagtgcttgctgctgataattttgggtttcttcacatgatcgatcatcgtaccaataac
agtacgggtgagcctattctgatacacaagcaaggaagcaaagtttgtggcctcgactgc
aaccctgtccagcctgagcttcttctcagttgtgggaacgatcattttgcgcgaatctgg
gatatgcgtaaactacaacctaaagcttctcttcatgatcttgcacacaaacgagtagtc
aactctgcttacttctctccatcatcaggcacgaaaatcctcacgacgtgtcaggacaac
cgtattcgaatatgggactctatcttcgggaacttagatttgccaagccgagagattgtt
catagtaatgatttcaatcggcatttgacaccattcaaagctgaatgggaccctaaggat
acctcggagtcactcatcgtgattggtcgttacatcagtgaaaactacaacggaactgct
cttcacccaatagatttcattgatgcaagcaatggacaattggttgcagaggttatggat
ccaaacatcacaactattactccagtcaacaagttgcatcctcgcgatgatgttttagct
tcaggaagttcaaggtcgctgttcatttggaggccacaggataatacagagatggttgag
gagaagaaggataagaagattatcatatgttatggtgacagcaagaagaaaggaaagaag
caaaagcgtggcagcgatgatgaagacgatgaagatgacatatttagctctaaaggcaaa
aacataaaagtcaataagtatcaagcaaaaacaaccaagaagacaaaaacttaa
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integrated database retrieval system
