Arabidopsis thaliana (thale cress): AT5G61070
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Entry
AT5G61070 CDS
T00041
Symbol
HDA18
Name
(RefSeq) histone deacetylase of the RPD3/HDA1 superfamily 18
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ath01009
]
AT5G61070 (HDA18)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G61070 (HDA18)
04131 Membrane trafficking [BR:
ath04131
]
AT5G61070 (HDA18)
03036 Chromosome and associated proteins [BR:
ath03036
]
AT5G61070 (HDA18)
Enzymes [BR:
ath01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
AT5G61070 (HDA18)
Protein phosphatases and associated proteins [BR:
ath01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
AT5G61070 (HDA18)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
AT5G61070 (HDA18)
Membrane trafficking [BR:
ath04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
AT5G61070 (HDA18)
Chromosome and associated proteins [BR:
ath03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
AT5G61070 (HDA18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Hanta_nucleocap
Motif
Other DBs
NCBI-GeneID:
836228
NCBI-ProteinID:
NP_200915
TAIR:
AT5G61070
UniProt:
Q8LRK8
A0A654GDE3
LinkDB
All DBs
Position
5:complement(24571095..24574387)
Genome browser
AA seq
682 aa
AA seq
DB search
MLLKFEASSELRLVDPSVSLTVLRKIRLSHLPDMTMTSESSGKKCGEGDGKVAGKSQRKV
GLVYDETMCKHDTPNGKVDVECPDRIRVIWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHT
KKHVNLVKSISTKKKDSRRNKIASQLDSIYLNGGSSEAAYLAAGSVVKVAEKVAEGELDC
GFAIVRPPGHHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIHHGNGTQK
MFWKDSRVLIFSVHRHDHGSFYPFGDDGDFNMVGEGPGEGFNINVPWEQGGCGDADYLAV
WNHILIPVTKEFKPDIILLSAGFDAAIGDPLGGCCVTPYGYSVMLKKLMEFAHGKIVLAL
EGGYNLESLGKSSLACVQVLLEDKQIHGSSETYPLESTRRVIQAVRERLCTYWPSLDASM
ASNENLKNPSAERNSADALLREVEELKSLMAARDGELEARRKELKAKNKELEANEKELEA
GLMLIRAREDVICGLHAKIESLQQERDEAVAKAERIDKELQEDRARSQEFKEDTEFCLST
LRREKELAIMAKNKDLEAKEKELEARLMLVHAREDKIHAKIERLQQERDEAVAKAERIDK
ELQEDRSRSRVGNGSFAFSQEFYEDMDLDELEPLSPEFNEDMDSEELEPFQVIKKNMERS
HKKFIKDMECIKFIASERARVL
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgcttttgaagtttgaagcttcttcagagttgagactagttgacccttcagtttctctc
actgttcttcgaaagataagactgtcacatctcccggatatgacaatgaccagcgaatct
tccggcaagaaatgcggagagggtgacggcaaagtcgccggtaaaagccagcgaaaggtg
ggtcttgtttatgacgagaccatgtgcaaacacgacacacctaacggtaaggttgacgta
gagtgtcccgatcgtatcagagttatctgggagaagcttcagctcgccggagtcactcaa
agatgtgtggttcttggtggtagtaaagctgaagataagcatctcaaattggttcacaca
aagaaacatgttaatttagtgaagagtattagcacaaaaaagaaagattctcggagaaac
aagattgcttcacagttggattcgatttatctgaatggaggttcatctgaagctgcatat
cttgcagctggatctgttgtaaaggtggcagagaaagttgcagaaggagagttagattgt
ggctttgctattgtcaggcccccaggacaccatgccgagtcagatgaagccatgggtttt
tgtttattcaacaatgttgccgttgctgctagttttttactaaacgaaagacctgatcta
gatgtcaagaaaattctgattgtcgattgggatatccatcacggaaatggtacacagaag
atgttctggaaagattctcgcgtactaatattctctgttcataggcatgatcacggaagt
ttctatccatttggcgatgatggagactttaacatggttggcgaaggtccaggtgaaggg
tttaacattaacgttccatgggagcaaggaggatgtggagatgcagactatcttgccgta
tggaaccacatcttgatccctgtgaccaaggaattcaaaccagatattattttgctttca
gctggatttgatgcagctattggtgatccgcttgggggttgttgtgttaccccatatgga
tattcagttatgttgaagaagctgatggagtttgcacatggaaagatagtgctggcatta
gagggaggatacaatcttgagtcattgggaaagtcttcactcgcatgtgtccaagttttg
cttgaagacaaacaaattcatggttcatctgaaacatacccattagaatctacacggcgt
gtcatacaagcggtacgcgagagactatgcacatattggccttcacttgacgcgtcaatg
gcgtctaatgagaatttaaagaacccaagtgcagaaagaaactccgctgacgccctcctt
cgtgaagtggaagagttaaagtctctaatggctgcccgagatggagaactggaggcaagg
agaaaagagttaaaggccaaaaataaggagctagaagcgaacgagaaggagctagaagcg
ggactaatgttgattcgcgctcgggaggatgtaatctgtggtcttcatgcaaaaatagag
agtttgcagcaggagcgagatgaggcggtagcgaaagctgaacgcatagataaggaactc
caagaggatagggcaagaagccaggagttcaaagaagacacagagttttgcttgagtacg
ttaaggagggagaaggagcttgccatcatggccaaaaataaggacctagaagcgaaagag
aaggagctagaagcgcggctaatgttggttcacgctcgggaggataaaattcatgccaaa
atagagaggttgcagcaggagcgagatgaggccgtagcaaaagctgaacgcatagataag
gaactccaagaggataggtcaagaagccgagttgggaatggatcttttgccttttctcag
gagttctatgaagacatggacttagacgagctcgaacctctgtctccggagttcaatgaa
gacatggactcggaagagcttgaaccgtttcaggtcatcaagaaaaacatggagcgttcc
cacaagaagttcataaaagatatggagtgtatcaagtttatcgccagtgagagagccagg
gtactttag
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