Arabidopsis thaliana (thale cress): AT5G61140
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Entry
AT5G61140 CDS
T00041
Name
(RefSeq) U5 small nuclear ribonucleoprotein helicase
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT5G61140
Enzymes [BR:
ath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AT5G61140
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
AT5G61140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
DEXQc_Suv3
T2SSE
AAA_19
UvrD-helicase
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
836235
NCBI-ProteinID:
NP_001190584
TAIR:
AT5G61140
UniProt:
Q9FNQ1
A0A654GD05
LinkDB
All DBs
Position
5:24589906..24603522
Genome browser
AA seq
2157 aa
AA seq
DB search
MVHNSPCNKHKTTSISWTRILAGRCTGLFVQVSNRRRFRTQAIAFFLGEPTRGENTTEEK
NPKRHKYRDFVMLVQLPRLTSSLREPFDIDQAYLRRKTILQTLNKPRSSGNRLDESDLAK
RIVHQWEGASLEVRQAYKQFIGAVVELIDREVPSDEFREVAFSAYRLFNNPVEEDDSDIN
DNISISGKKLELQNLVGHAVSDANVKNVASFAQALYSIQPTHQSETYADEVNGGAEFGAD
LVFNLPARFLVEASLDETGFVDVESNDAHTSFSEGWSGVSDTKNNLSAGKFNLSWLRDAC
GRMVRETNSQLSREELAMAICRFLDSDKPGEEIAGDLLDLVGDGAFETVQDLIMHRKEIV
DAIHHGQMILKSDKAASNTQSRMPTYGTQVTVQTESAKQIEKLRRKEEKKNKRNADLGLE
SEISEANFSSLLEASEKKTAFEDLIGSGEANSLALALPQGTVRKHLKGYEEVFIPPTPTA
QMKPGEKLIEIKELDDFAQAAFHGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIA
MISVLHEIKQHFRDGYLHKNEFKIVYVAPMKALAAEVTSAFSRRLAPLNMVVKELTGDMQ
LTKTELEETQMIVTTPEKWDVITRKSSDMSMSMLVKLLIIDEVHLLNDDRGAVIEALVAR
TLRQVESTQTMIRIVGLSATLPSYLQVAQFLRVNTDTGLFYFDSSYRPVPLAQQYIGITE
HNFAARNELLNEICYKKVVDSIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYETLDLFTN
ETHPQFQLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTA
TLAWGVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSH
DKLAYYLRLLTSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYLSIRMKLNP
LAYGIGWEEIIADPSLSLKQRALVADAARSLDKAKMMRFDEKSGNFYCTELGRVASHFYI
QYSSVETYNEMLKRHMNESEIINMVAHSSEFENIVVREEEQHELETLARSCCPLEVKGGP
SNKHGKISILIQLYISRGSIDAFSLVSDASYISASLARIMRALFEICLRKGWCEMTLFML
EYCKAVDRQLWPHQHPLRQFERDLPSDILRKLEERRDDLDHLYEMEEKEIGALIRYNPGG
RLVKQHLGYFPSIQLAATVSPITRTVLKVDLLITPNFIWKDRFHGTALRWWILIEDTEND
YIYHSDLFTLTKRMARGEPQKLSFTVPIFEPHPPQYYVHAVSDSWLHAETYFTISFHNLA
LPEARTSHTELLDLKPLPVTSLGNKLYESLYKFSHFNPIQTQIFHVLYHTDNNVLVGAPT
GSGKTISAELAMLRLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVAPLGKEMVEMTGDY
TPDLVALLSADIIISTPEKWDGISRNWHTRSYVKKVGLVILDEIHLLGADRGPILEVIVS
RMRYISSQTERSVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPIEVHIQGYPG
KYYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSV
SEEDLQMVLSQITDQNLRHTLQFGIGLHHAGLNDHDRSAVEELFTNNKIQVLVSTSTLAW
GVNLPAHLVIIKGTEYFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKS
FYKKFLYEPFPVESSLKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYG
LEGTQDETICSYLSRLVQTTFEDLEDSGCLKVNEDSVEPTMLGTIASQYYLCYMTVSMFG
SNIGPDTSLEAFLHILAGASEYDELPVRHNEENYNKTLSDRVRYPVDNNHLDDPHVKANL
LFQAHFSQLALPISDYNTDLKSVLDQSIRILQAMIDICANSGWLSSSLTCMRLLQMVMQG
MWSDQDSSLWMIPCMNDLLLGSLTARGIHTLHQLLNLPRETLQSVTENFPASRLSQDLQR
FPRIQMNVRLQKKDSDGKKKPSTLEIRLEKTSKRNSSRALAPRFPKVKDEAWWLVLGDTS
TSELFAVKRVSFTGRLITRMELPPNITSFQDTKLILVSDCYLGFEQEHSIEQLARRG
NT seq
6474 nt
NT seq
+upstream
nt +downstream
nt
atggtccacaactccccatgtaataaacataaaacgacgtcgatttcgtggacccgtatc
ttagcgggtcggtgtacgggcctatttgttcaagtatctaaccgacgccgttttagaacg
caagcgatcgccttcttcctcggagagccgaccagaggtgaaaacaccacagaggagaag
aatcctaaacgacacaagtacagggattttgtcatgttagttcagcttcctcgcttgaca
agctctcttagagagcctttcgacatcgatcaggcttaccttcgccgcaaaactatactc
caaactcttaataagcctcgcagctccggtaatcgccttgatgaatctgaccttgctaag
aggatagttcatcaatgggaaggagcttctctcgaagtgcgacaagcatacaagcagttt
attggagctgtagtggaattgattgatcgggaagttccatcagatgagtttcgcgaggtt
gctttttccgcttatcgtctgtttaacaatccagtggaggaagatgatagtgatatcaat
gataatataagcatttccgggaagaagttagagttgcaaaatcttgtcgggcatgctgtc
tcagatgctaatgtaaaaaacgtggcctcctttgctcaggcactttactcaatacagcct
actcatcagtctgagacatatgctgatgaagttaatgggggagctgagtttggtgccgac
cttgttttcaatctaccagctcgttttttggtggaagcatctcttgacgaaactgggttt
gtggatgtagaaagcaatgatgctcatacatcgttttctgaaggatggagtggtgttagc
gacacgaaaaataatctcagtgcaggaaaattcaatttaagttggctaagagatgcatgt
ggtcggatggttagagaaaccaattcacaactttcccgtgaagaattggctatggctata
tgcagatttctggattcggataaacccggtgaggagatagctggggatctgctggatctt
gttggggatggtgcatttgagactgttcaagaccttattatgcatcggaaagaaattgtt
gatgctatccatcatggccaaatgattctcaagtctgacaaagcagcttcaaacacccaa
tctcggatgcctacctatggaacacaggttactgttcaaacagagtctgcaaagcaaatt
gaaaaacttcggcgtaaggaggaaaagaaaaataaacgaaatgctgatcttggtttagag
agtgaaatatcagaggccaatttttcttctttacttgaggcaagtgaaaagaagactgca
tttgaggatctgattgggtctggagaagcgaattctcttgcacttgcccttccccaaggt
actgtaaggaagcacttaaaaggatatgaggaagtgtttatcccgccaacccctactgca
caaatgaaacctggcgagaagctgattgagataaaagagttagatgactttgctcaagct
gcttttcatggttacaagtctttaaaccgtattcagagtcgcatatttcagacagtttac
cacaccaatgagaatatattggtctgtgctccaacaggagctggtaaaacaaatatagct
atgatttctgttctacatgagatcaaacaacacttcagggatggctacttgcacaaaaat
gagtttaagattgtttatgtagctcctatgaaggcgttagcagcagaggtcacgtcagca
tttagccgtcgtctagctccattaaatatggttgtgaaggagcttacaggggatatgcaa
ctcacgaagactgaacttgaagaaactcagatgatagtgacaacaccagagaaatgggat
gtcattactcgcaaaagcagtgacatgtcaatgtcaatgctagtaaaactattgatcatt
gatgaagtgcatcttctgaatgatgatagaggtgcagtgatagaggcgctagttgctcgg
accctccgtcaggtggagtcaactcagacaatgataagaattgtaggcctgtcagccact
ttacctagctacctacaggttgctcagtttctacgagtgaatacagacactggcctattc
tattttgattcaagttatcgcccagttcccttagctcaacaatacataggcatcactgag
cataactttgctgctagaaacgaattattaaatgagatatgctacaaaaaggttgttgat
tcaattaaacaaggtcatcaagcaatgatatttgttcattcccgaaaagacacttcaaaa
acagctgagaaactggttgatcttgcccggcaatatgaaactctggatttgttcacgaat
gagactcatcctcaatttcaactgatgaagaaagacgttatgaagtccagaaataaggat
cttgtcaaattctttgaagctggcttcggaattcatcatgctgggatgttgagatctgat
agaacacttacggagaggctgttttctgatggtctcttgaaggtgcttgtttgcactgca
actcttgcgtggggtgtaaatctgcctgcacacacagtcgtaattaagggaacacaattg
tatgatgccaaggctggtgggtggaaagacttgggaatgcttgatgtcatgcagatcttt
ggaagggcagggagaccacaatttgataagagtggtgagggaattatcatcacatcccat
gacaagctggcatactatctccggctgctgactagtcagcttcccatagaaagtcagttc
ataagctccttgaaagataacttaaacgcagaagtggttttgggaactgtaactaatgta
aaggaagcctgtgcttggcttggatatacatatttgtcaattcggatgaagttaaatcct
ttggcttatggcattggatgggaagagataattgccgatccttctttatccttgaagcaa
cgagcccttgttgctgatgctgcccgttcactggacaaagctaagatgatgaggttcgat
gagaaaagtggaaacttttactgtaccgagcttggacgggttgcaagtcacttctatatt
caatattctagtgttgaaacatacaacgaaatgttgaagcggcacatgaatgaaagcgag
ataattaatatggttgcccattcttctgaatttgaaaatattgtggtaagagaggaagag
cagcatgaacttgagactcttgcacgctcttgctgtcccttagaagttaagggaggccct
tctaacaaacatggaaaaatttcgattcttattcagttgtacatatcccgtggatcaatt
gatgcattttctctggtctctgatgcttcatacattagtgctagtttagcacgtataatg
cgtgctctgtttgaaatatgcttgcgaaaaggctggtgtgagatgactttatttatgttg
gaatactgcaaggcagttgatcgtcaactatggcctcatcagcatcctcttcggcaattc
gaaagggatctgccttctgatatattaagaaaacttgaagagcgaagggatgacttagac
catttgtatgagatggaggaaaaggaaattggagcgctgattcgttataatcctggggga
aggttggtcaagcagcatctaggatattttccttcaattcagttggcagctactgttagt
ccaatcacccgcactgtattgaaggtggatttgcttataactccaaatttcatatggaag
gatcgttttcatggtactgctcttcgttggtggattctcattgaggacacagagaatgat
tatatctatcactcagatcttttcacactaacgaagcggatggctagaggggaaccacag
aagctttcttttaccgtaccgatatttgaaccacacccaccacaatactatgttcatgcg
gtttctgattcttggttgcatgcagagacttacttcacaatctcttttcacaatcttgca
ctaccagaggcgcggacgtctcacacagagcttttagacttaaaacctcttcctgtgact
tctcttgggaataagttgtatgaatcgctttacaaattttcacatttcaatccaatacag
actcagatttttcatgtgttatatcacacagacaacaatgttcttgtaggagctccaact
ggaagtgggaaaactatatctgctgaacttgcaatgttgcgtctcttcagtacccagcct
gatatgaaggttgtttacatagcaccactgaaggctattgttcgagaaaggatgaatgat
tggaaaaagcatcttgttgctccacttggaaaagaaatggttgaaatgactggagattac
actccagatttagtagctctcttgtccgcggacatcatcatatctacccctgaaaaatgg
gatggcattagtcgtaattggcatactcgaagttatgtcaaaaaggtcggccttgttatt
ttggatgagattcacttgcttggagccgacagaggaccgattcttgaggttattgtatct
aggatgagatatatatcatcacagacagagcgctccgtccggtttgttgggctttctaca
gctctggcaaatgcaggtgatttggctgactggttgggtgttggggagatcggacttttc
aattttaaaccaagcgtcaggcctgtaccaattgaagttcatattcagggttatcctgga
aagtattactgcccaaggatgaatagcatgaacaagccagcatatgcagccatatgtact
cattcacctacgaaacctgttcttatctttgtttcatcccgtaggcagacaaggcttact
gcattggatcttattcagtttgctgcctccgacgaacatccgcggcaatttctgagtgtg
tcagaggaagacttgcagatggtcctctcacagataactgatcaaaaccttcgacatacg
ttgcaattcggcatcggactgcatcatgcaggtttaaacgaccacgatagatctgcagtc
gaagagcttttcacgaacaacaagattcaggttttggtctcaacaagtaccttggcatgg
ggagtgaacctaccagctcacttagttattataaagggaacagaatatttcgacgggaaa
accaaaagatatgttgacttccctcttacagagatcttgcaaatgatgggacgtgcaggg
cgaccacagtttgaccaacatgggaaagcggttattcttgtacatgaacctaaaaaaagc
ttttacaaaaagttcttgtacgaaccattccccgtagaaagtagtttgaaagagaagctg
cacgatcacttcaatgcggaaatcgtctctggaacaataggcaacaaagaagatgcagtg
cattatcttacatggacgtatttgtttcgtagactgatggctaatcctgcttactatggg
ctagaaggtactcaagacgaaacaatctgttcctacttatcaagattggtgcaaaccaca
tttgaggatcttgaagacagtggttgcctcaaagtaaatgaagatagtgtggagcctacg
atgctgggtacaatagcgtcacagtattacctttgctacatgaccgtgtctatgtttggc
tctaatataggtcctgacacatcgcttgaagcatttttgcatatcttggctggtgcttct
gagtatgatgaacttcctgtgcggcacaatgaggaaaattacaataaaacactgtcagat
agagttcggtatcccgtggataataaccatctagatgatcctcatgtgaaagcgaatctg
ctcttccaggcacatttttctcaattggcacttccaatcagtgattataacacggattta
aagtcagtactggatcaaagcattcggatcctccaggccatgattgatatctgcgcaaac
agtggatggctctcaagctcactgacgtgtatgcgccttttgcaaatggtcatgcagggc
atgtggtctgatcaagattcgtcattatggatgatcccatgcatgaatgaccttcttcta
ggatctctgaccgcaagagggattcacacgctacatcagctattaaatcttccaagggaa
actctacaaagtgtaaccgaaaacttccctgcatcaagattatctcaggatctccaacga
ttcccacggatccaaatgaatgtgagactccaaaagaaggattccgatggcaagaaaaag
ccttcaacgctggaaatcagattggaaaagacatcaaagaggaatagctcgagggcattg
gcccctcgattcccaaaggtgaaagacgaagcgtggtggttggttcttggtgatacttca
acttctgagctctttgctgtgaagagagtttcgttcactggtcgtctgatcacacgcatg
gagttacctcccaatataacctcttttcaggatacgaaactcatcttagtttcggattgt
tatttggggtttgaacaagaacactccattgaacaacttgcacgacgcggatga
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integrated database retrieval system
