KEGG   Arabidopsis thaliana (thale cress): AT5G64270
Entry
AT5G64270         CDS       T00041                                 
Name
(RefSeq) splicing factor
  KO
K12828  splicing factor 3B subunit 1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT5G64270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT5G64270
   03036 Chromosome and associated proteins [BR:ath03036]
    AT5G64270
Spliceosome [BR:ath03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    AT5G64270
 Complex B
    AT5G64270
 Complex C
   U2 SnRNP specific factors
    AT5G64270
Chromosome and associated proteins [BR:ath03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    AT5G64270
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N Htt_N-HEAT_1 HEAT_ECM29 HEAT_2 Vac14_Fab1_bd XMAP215_CLASP_TOG ParcG Adaptin_N MMS22L_C
Other DBs
NCBI-GeneID: 836548
NCBI-ProteinID: NP_201232
TAIR: AT5G64270
UniProt: Q9FMF9 A0A5S9YGW5
LinkDB
Position
5:25706608..25711355
AA seq 1269 aa
MADLDPEIAKTQEERRKMEADLASLTSLTFDRDLYGGNDRASYSTSIAPNEEDDANLDTT
GSLVAQRLASYTAPRSILNDVARPHNEDDDVGFKPRQSIAEREGEYRNRRLNRVLSPDRV
DAFAMGDKTPDASVRTYTDHMRETALQREKEETMRLIAKKKKEEEEAAAKHQKDSAPPPP
ASSSSSSSKRRHRWDLPEEDGAAAKKAKAASSDWDLPDAAPGIGRWDAPTPGRVSDATPS
AGRRNRWDETPTPGRVTDSDATPGGGVTPGATPSGVTWDGLATPTPKRQRSRWDETPATM
GSATPMGGVTPGAAYTPGVTPIGGIDMATPTPGQLIFRGPMTPEQLNMQRWEKDIEERNR
PLSDEELDAMFPKDGYKVLDPPATYVPIRTPARKLQQTPTPMATPGYVIPEENRGQQYDV
PPEVPGGLPFMKPEDYQYFGSLLNEENEEELSPEEQKERKIMKLLLKVKNGTPPQRKTAL
RQLTDKARELGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRILYKLDEMVRPYVHKILV
VIEPLLIDEDYYARVEGREIISNLSKAAGLASMIAAMRPDIDNIDEYVRNTTARAFSVVA
SALGIPALLPFLKAVCQSKRSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLSD
ENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPL
MDAIYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEPEYIRSDILPEFFR
NFWTRKMALERRNYKQLVETTVEVANKVGVADIVGRVVEDLKDESEQYRRMVMETIDKVV
TNLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICGT
IKWRLNNKSAKVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLGSILG
ALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREW
MRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVA
IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLED
ALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNFIWPNIFETSPHVINAVMEAIE
GMRVALGAAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYPVLEDEQNNVY
SRPELTMFV
NT seq 3810 nt   +upstreamnt  +downstreamnt
atggcggatctagatccagagatcgctaaaactcaggaggaaagacggaagatggaagca
gaccttgcttctctcacttctctgactttcgatcgcgatctatacggaggtaacgaccgt
gcttcctactcgacttctattgcacctaacgaggaggatgatgcgaatctggacaccact
ggttctcttgtggctcagcgcctcgcgtcttatactgctcctaggtcaattcttaacgac
gtggctcgtcctcacaacgaagatgacgatgtgggatttaaacctaggcagagtattgcc
gaacgtgagggtgaatataggaataggagactcaatcgggttctttctccggatagagtt
gatgcctttgctatgggcgacaaaacgccggatgcgagtgttcgtacttacacggaccat
atgagggagacggctttgcagagggagaaagaggaaactatgagactcattgccaagaag
aagaaagaggaagaagaagctgctgcgaagcatcagaaagattctgctcctcctcctcct
gcttcctcttcttcttcctcttccaagaggagacacaggtgggatctccctgaagaagac
ggtgctgctgcaaagaaggctaaagcagcaagttcagattgggatttacctgatgcagct
ccagggattggacgatgggatgctcctactccagggagagtttctgatgccacaccatct
gctggacgaaggaacaggtgggacgaaactcctacacctggtcgtgtgactgattctgat
gcaacacctggtggtggtgttactcccggtgctactccttcaggtgttacttgggacggg
cttgccacgcctaccccaaagcgtcaacgttcaaggtgggacgaaacaccagccactatg
gggagtgctacacctatgggtggagtcactcctggtgcagcttacactcctggtgttacc
ccaattggtgggattgatatggctactccgactccgggtcagcttattttccgtggtcct
atgacccccgagcagctcaatatgcaaaggtgggagaaggatatcgaggaaagaaacaga
ccattgagtgatgaagagcttgatgccatgtttcctaaagatggatacaaggttttggat
ccgcctgctacgtatgttcccatcagaacccctgcgaggaaacttcaacaaaccccgaca
cccatggcaactcctggctatgttattcctgaggaaaaccgtgggcaacagtatgatgtg
cccccagaagttcctggtggtttgccgtttatgaaaccagaggattatcagtattttggt
tctctgttaaatgaagagaacgaagaagagctgtctcctgaagagcagaaagaacgcaag
ataatgaaactgttgttaaaggttaaaaatggaactcctccccagaggaaaacagcgctg
aggcagcttactgataaggctcgtgaacttggtgctggtcctttgttcaataaaattttg
ccattgctcatgcaacccactttggaagatcaagagaggcatcttttggtcaaagtgatt
gatagaattctgtacaaacttgatgagatggtaaggccttacgtccacaaaatccttgtt
gttattgagcctttgctgattgatgaagattattatgctcgtgtagaagggagagagatt
atttctaaccttagcaaagcagctggtttggcctctatgattgcagctatgcgtcctgat
attgacaacatcgatgaatatgtgaggaacacaacagcgagagctttcagtgtggtggct
tcagctcttggaatccctgcactcttgcctttcctgaaagctgtgtgccagagtaaaagg
tcatggcaggcacggcatactggaatcaagattgttcagcagattgcgatactaattggt
tgtgctgtcctgcctcacttaaggtctttggtagagattatcgaacatggtcttagtgat
gaaaaccagaaggttaggactattaccgcattgtcactggctgctcttgctgaagctgct
gctccatatggtattgagagctttgattctgttctgaagcctttgtggaaaggtattagg
tcgcaccgtggtaaagttttagctgctttcttgaaggcgatcggttttatcattcccttg
atggatgctatatatgcgagctactatacaaaagaagtcatggttatcttgattcgtgag
ttccagtcgcctgatgaagagatgaagaagatcgtcctcaaggtggtgaaacagtgtgta
agtacagagggtgttgaaccggaatacattcgtagtgatattctgcccgagtttttcagg
aatttctggacaaggaaaatggctctggagaggagaaactataagcagcttgttgaaact
actgtggaggttgcgaacaaggttggtgttgcagatattgtgggaagagttgttgaagat
ctcaaggacgagagtgaacagtatcgacgtatggttatggaaaccattgataaggttgtc
acaaacttaggagcatctgatattgatgcgaggttggaggaactgctcatagatggcatt
ctttatgcttttcaagaacagactagtgacgatgctaatgtgatgcttaatggattcggt
gctgtagtaaatgctcttggtcagcgagtaaagccttatcttccccagatctgtggtacc
atcaagtggcgattgaacaacaagagtgcaaaggtaagacagcaagctgctgatctgatt
tctcgaattgcagttgttatgaagcaatgcggagaggaacagttgatgggacatctaggt
gttgttttgtatgaatatcttggagaagagtacccagaagtcttgggatcgattcttggg
gctttaaaagctatagtcaatgtgattggtatgacgaagatgactcctcctattaaggat
cttctaccaaggctgaccccgattttgaagaataggcatgagaaagtgcaagagaattgt
atcgatcttgttggtaggattgctgatcgtggtgccgagtttgttccagcaagagaatgg
atgagaatctgtttcgagcttcttgaaatgcttaaagctcataagaaaggtattcgtcgt
gctactgtcaacacttttgggtacattgccaaagccattgggccacaagacgttctagcc
acgttgcttaacaatctcaaagtccaagaacgtcagaaccgtgtttgcaccacagttgca
atcgccatagtcgctgaaacatgctctcccttcaccgtcttacctgctttgatgaatgag
taccgtgttccagagctaaacgtccaaaatggtgttctgaaatctctctccttcctcttc
gagtacattggagagatgggcaaagattacatatacgcagttacaccgttgcttgaagac
gctctcatggacagggatttggttcatagacaaacggctgcttcagctgtgaaacatatg
gctctaggtgtagctgggttgggatgcgaagacgccttggttcacttgcttaacttcatt
tggcccaacatttttgagacatctcctcacgtcattaacgcagtgatggaagccattgaa
ggaatgcgagtcgcattaggagcagctgtaattctgaactattgcttgcagggtttgttt
catccggcgcgcaaggtccgcgaagtgtactggaagatatacaattctttatacattggt
gctcaggacacccttgttgctgcttacccggttcttgaagacgagcagaacaatgtgtat
agccgaccggagttgacgatgtttgtgtga

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