Arabidopsis thaliana (thale cress): AT5G67240
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Entry
AT5G67240 CDS
T00041
Symbol
SDN3
Name
(RefSeq) small RNA degrading nuclease 3
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
AT5G67240 (SDN3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ath03009
]
AT5G67240 (SDN3)
Ribosome biogenesis [BR:
ath03009
]
Eukaryotic type
Pre-60S particles
RNases
AT5G67240 (SDN3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_fung
RRM_ESF1
Motif
Other DBs
NCBI-GeneID:
836859
NCBI-ProteinID:
NP_201525
TAIR:
AT5G67240
UniProt:
Q8RXK2
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All DBs
Position
5:complement(26824236..26828318)
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AA seq
782 aa
AA seq
DB search
MEHKLATAEKKLLVDLVKLVQKRGLEGENGGWKEFLNVYDKKLGSSLSDPARRSNDVLVA
FLLTFKKKEDLQLIARVMQCGANRELIEKFKQETPDKETPEQRLVRLTITHDDYPGNYTF
PSYAEDWYVTELGKKKSKVIKSTRMLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFV
KPDKPVIDYKTDITGVTAEDLERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRID
HARVIDTSYVFEFVDAPKTQRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAV
EKGAATLIQPTEEMMVAEKRRQEARQEAGKAQLFLHKIPHDVPSEELHGVLSGNFTLVVK
PPKTGGYSTAVVDFSSPEEANEAFENVEGDVAKDKSGLPQKKAVLKLSSGLAVSLFVRKM
VQDDSPCEISTSERARAEENNVSSKRQKTEDETEETKEATVNQREADKTKLFLHKIPHDV
PSQELHGVLNGDFTLDVKPPKRKGGYYNAVVDFNSPEEANEAFENVEGDVVKDKTGLPQK
MVVFKLSSGSGVSLYVRKMVHDDSPGEISTTKRARTEESNMSSKRQKTEDESEETKEANA
KQREADKTKLLLHKIPLNVPSQELKVVITGQFTLEVMPPKRKGRYYNAVVTFNSPEEANK
AFEKVKGEAVKEKGGLAQKMVAFKLSSGSGACLYVRKMVQDESEETKEANANHCEDDHLK
EMEELKEKLKAMEFAISCEGHSKEIEELKQKLNAKEHQIQAQDKIIANLKMKLEKKQSKS
RS
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggagcataaactagccactgctgagaaaaaattgctagtagacctagtcaagctagta
cagaaacgaggtttggaaggcgagaacggaggatggaaggaatttctaaatgtttacgac
aaaaaattaggatcgagtttgagtgatcctgcgagacgttccaatgatgttttggttgct
tttcttttgacatttaaaaagaaagaagatttgcagctaatagctagggttatgcaatgt
ggtgctaatcgtgaactaattgagaaattcaagcaagagactccggataaagagactcct
gagcagaggctagttcgattgactattactcatgacgattatcctggaaactatacgttc
ccttcctacgctgaggattggtatgtaactgagcttggaaagaagaagtcgaaagtgatt
aaatctactagaatgctttctattgattgtgagatggttacctgtgaagatgggagccag
gctttagttagagttggcgctgtggaccgtgacttaaaggtggttcttgacaaatttgtg
aaaccggacaaaccagttattgactataagacggatattactggagttactgctgaggat
cttgagagagctactctttctgttgcagatattcaaaaaaaattgcgtaggtttctttct
gtgggaactattttggtaggtcatggtttgcataatgatcttcaagtgttgaggatagat
catgcgagagtaatagatacttcatatgtatttgagtttgtcgatgcaccaaagactcaa
agaccttctttgaataatctatgcaagtctgttttaggtcaagaagtgcgaatggacggt
gctgctcacaattgtgttcatgacgcagcagctgccatgaaacttgtacttgctgctgta
gaaaaaggagcagccactttaattcaaccaactgaagaaatgatggtggctgaaaagaga
agacaggaggcaagacaggaggctggtaaggcacagctcttccttcataaaatccctcac
gatgttccatctgaagagttacatggagttcttagcgggaatttcacacttgttgttaag
ccaccaaaaacaggaggttattctactgcagtcgttgattttagtagtccggaagaagca
aatgaagcatttgaaaatgttgaaggagacgtagctaaggataaatcgggtttgccacaa
aaaaaggctgtgttgaagctgagttctggattagcagttagtttattcgttcgtaaaatg
gttcaagatgattctccgtgtgaaatctctacctccgagagagctcgtgcagaggagaac
aatgtgagttctaagagacagaagacggaagatgaaactgaggagaccaaagaagcaact
gtaaaccaaagagaggctgataagacaaagcttttccttcataaaatcccacacgatgtt
ccatctcaagagttacatggagttcttaacggggatttcacactcgatgttaagccacca
aaaagaaaaggaggttactacaatgcagtcgttgattttaatagtccagaagaagcaaat
gaagcatttgaaaatgtggaaggagacgtagttaaggataagacgggtttgccacaaaaa
atggttgtattcaagctgagttctggatcaggagttagtttatatgttcgtaaaatggtt
catgatgattctccgggtgaaatctctacaaccaagagagctcgaacagaggagagcaat
atgagttctaagagacagaagacagaagatgaatctgaggagaccaaagaagcaaatgca
aagcaaagagaggctgataagacaaagctcctccttcataaaatccctctcaatgtcccg
tctcaagagttaaaagtagttattaccgggcagttcacacttgaagttatgccacccaaa
agaaaaggacgttattacaatgcagttgttacttttaatagtccagaagaagcaaataaa
gcatttgaaaaagttaaaggagaagcagttaaggagaaaggtggtttggcacaaaaaatg
gttgcgtttaagctgagttcaggatcaggagcttgtttatacgttcgtaaaatggttcaa
gatgaatctgaggagaccaaagaggcaaatgcaaaccattgtgaggatgatcatttaaaa
gaaatggaagaactgaaggaaaaactcaaagctatggagttcgcaatcagctgcgaaggt
cattcaaaagaaattgaagaactgaagcagaagctcaatgccaaggaacatcagatacag
gctcaggataagattatagccaacctcaaaatgaaactggagaagaaacagtcaaagtct
cggtcatga
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