Aneurinibacillus thermoaerophilus: K3F53_00570
Help
Entry
K3F53_00570 CDS
T07487
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
athe
Aneurinibacillus thermoaerophilus
Pathway
athe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
athe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K3F53_00570 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
athe03400
]
K3F53_00570 (mfd)
Enzymes [BR:
athe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K3F53_00570 (mfd)
DNA repair and recombination proteins [BR:
athe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K3F53_00570 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QYY42902
LinkDB
All DBs
Position
105340..108897
Genome browser
AA seq
1185 aa
AA seq
DB search
MQGLVERFKRDSEFEAIVESFEKGLREQLASGLSNSARQIFYAALYQKMEQPLVIVTHNM
FQAQKVYDDMSQLISPDELWLYPANEMVISEVSISSPETLSQRIEVLNALSAGKKGVLII
PYAGVRRSVVPVDEWRQAQCSIKVGSEIELDSFLAKMVALGYERVEMVEARGEISVRGGI
IDIFPVYTANPVRIELFDAEVDSIRTFDISTQRSIENLSEVVIGPTREVFGDKAVFNRAA
ERLEEHMSRALPKVKDIQAREKILEKVGWEIEQLRQGHSFTGIYKYISFLYRTNETLIDY
MSCSPLVVIDEPSRIVEAAAQLEKDEAEWKTTLIQQGEFLPDIELSHSLEDIIAPKKWKI
LHASLFLRQVPKTNPQNVVNFNCKAMQNFHGQMNVLKTEMERWKKAKATVVFCAADEERA
RRLERVFHDYDIEADIILSPEKALESGRPVITLGNLQSGFELPMLHLVVITETEVFTQKQ
RKAAKTRKNLSNAERIKSYTELRVGDYVVHVNHGIGKYLGIETLKINGIHKDYLHIKYAG
NDKLYVPIEQIDQVQKYIGSEEKEPKVYKLGGSDWKKVKSKVRASVQDIAQDLIRLYAER
QQARGYAFSKDGEEMREFEAMFPYEETEDQLRAIREIKEDMEKPRPMDRLLCGDVGYGKT
EVAIRAAFKAVMDGKQVAVLVPTTILAQQHYETFRERFADYPVNIAVISRFRTRKEQNQT
IKGLKDGTVDIIIGTHRLLSKDVAFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLT
ATPIPRTLHMSMLGVRDLSIIETPPENRFPVQTYVMEYSGALVREAIERELAREGQVYFL
YNQVQGIEQMADQIRMLVPEARVVVAHGQMSETELESVMLSFLEGEADVLVSTTIIETGV
DIPNVNTLIVTNADRMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLNEVAEKRLQAIKE
FTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLKDAIEELKGEPKKEEE
VHPEINLTIDAFIPSDYIQDGKQKIEMYKKFAAVSSFEEIDELTEELEDRFGDIPQSVRN
LLLVSKLRVHARKHRIVEISQKGDTIQLVFHEDQSTKVDWGDLYEIKGPLLRRITPSRQG
QQVVVGIKVKGLNHEESIELVENFLMQFDELKKKQEGEAVADVAN
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
ttgcagggtctggtagaaagatttaagcgtgacagcgaattcgaggcgattgtggaaagc
ttcgaaaaagggttgcgcgaacagttagcatccgggttaagtaactcggcccgtcagata
ttttatgccgcactttatcagaaaatggagcaacctctggtaattgtgacgcacaatatg
ttccaggctcagaaagtatatgatgatatgagccagttgatttcccctgatgagctatgg
ctgtatccggctaatgaaatggttatctcagaagtatccatttctagcccggagacgctt
agccagcgaattgaagtattgaacgctctttccgcaggaaaaaaaggcgtgcttattatt
ccatatgccggagtgcgccgttcggtcgtgcctgtagatgagtggaggcaagcccagtgt
tccattaaagttggaagcgaaattgaattggatagttttctagcaaagatggtagcgctt
ggatatgagcgggtagaaatggtagaagcgcgtggcgagattagcgttcgtgggggaatt
atcgatattttccccgtatacacggcaaatccggttcggatcgaattgtttgatgcggag
gttgactctatccggacatttgatatttccacccagcgttccattgaaaatttatccgaa
gtggttatcggcccaacccgggaggtctttggcgataaagcggtgtttaaccgagcggcg
gaaaggcttgaagagcatatgagccgtgcattgcccaaggtaaaagacattcaggcgaga
gagaaaattttggaaaaagtcggatgggagattgaacagcttcgtcagggtcattcattt
acgggaatctataaatatatttcttttctttatcggacaaatgaaacactgatagattat
atgtcatgttctccgcttgtcgtgattgatgagccttcccgtattgtagaggcggccgct
caattggaaaaagatgaagcagaatggaagacgacattaatacagcaaggggaatttctt
cctgatattgaattatctcattcactggaagacattattgcgccgaaaaaatggaagatt
cttcatgcctcactttttttgcgtcaggtgccgaaaacgaatccacagaacgttgtgaac
tttaactgtaaagcgatgcagaatttccacggtcagatgaatgtgcttaaaacggaaatg
gaacgttggaagaaagccaaggccaccgtagtattctgcgcggcagatgaagaacgggcg
cgccgtttggagcgcgtatttcatgactatgatattgaagcggatattatcctttcaccg
gaaaaagcgctggaaagtggaagaccggttattacccttggcaatctgcaaagcggattt
gaacttccgatgctgcacctcgtagtgattacagaaaccgaagtgtttacccagaagcag
cgcaaagcagcaaagacgcggaaaaatttgagcaatgctgagcgcattaaaagctacaca
gagcttcgggttggagattatgttgtgcacgtaaatcatggtatcggaaaatatttgggg
attgaaacgcttaaaattaatggtattcataaagattatcttcatattaaatatgctggc
aatgataagctatatgttccgattgaacaaatcgatcaggtacaaaagtacatcggcagt
gaagaaaaagagccgaaagtatacaaattgggcggaagtgattggaaaaaagttaagagt
aaagtccgcgcttctgtgcaggatattgcccaggacttgattcgtttgtatgcggagcgt
cagcaggcaagaggatacgcctttagcaaagatggagaagagatgcgtgaattcgaagcg
atgttcccttatgaggagacggaggatcagcttagggcgattcgtgaaattaaagaagat
atggagaagccgcgtcccatggatcgtttgctttgcggtgatgttggctatgggaaaaca
gaagtggctattcgcgccgcatttaaggccgtcatggatggaaaacaggtagctgtgctt
gttccaacgacgatcctcgctcagcaacattatgagacgttccgggaaagatttgccgat
tacccggttaacatcgcagttattagtcggttccgtacccggaaagagcagaaccagacg
atcaagggattaaaagacggaacggttgatattatcatcggtacgcatcgtttgttgtct
aaagacgtggcattcaaagatttaggcctgcttattgtcgatgaagaacagcgttttggt
gttacacacaaggaaaagttgaagaagttaaagacaaatgtggatgttttgacattgaca
gcgactccgattccgcgtacactgcacatgtcgatgcttggcgtgagggatctgtcgatc
attgagacgccgccggaaaaccgtttcccggtacagacatacgttatggaatacagcggt
gcgcttgtacgggaagccattgaacgcgaattagcgcgtgaaggacaggtttatttcctt
tataaccaagttcagggtattgaacagatggcagaccaaattcgcatgcttgttccggaa
gcgcgagtggtggttgcccatggtcagatgagtgaaacggaacttgaatctgtcatgttg
agttttttggagggcgaggccgatgtccttgtcagcacaaccattattgagacaggtgtg
gacattccaaatgtaaatacgcttattgtaacaaatgctgaccgtatgggactgtcacaa
ctgtatcagttgcgcgggcgtgtgggtcgctccaatcggattgcgtatgcatacttcaca
taccagcgtgataaggtgttgaatgaggttgcagaaaagcgtttgcaagcgattaaagag
tttacggaactaggctctgggtttaaaatcgcgatgcgtgacctgtctattcgtggcgcg
gggaacttgcttggagcggagcaacacggcttcattgcatccgttggttttgatttgtac
agtcagatgctgaaggatgcgattgaggaactgaaaggtgagccgaagaaagaggaagaa
gtgcatccggagattaatttgacgatcgatgcatttattccgtccgactatattcaggac
ggaaagcagaaaatcgagatgtacaagaagttcgcggccgtttcttcttttgaagaaatt
gatgaattaacagaagaactggaggatcgctttggtgatattccgcaaagcgttcggaat
ttgttgctggtgtccaaactgcgcgtgcatgcgagaaaacatcgtattgtggagatcagc
caaaagggagatacgattcaacttgtcttccacgaagatcagagtactaaagtggattgg
ggtgacctctacgaaattaaggggcctcttctgcggagaattacgccctcgcgtcaaggg
caacaggttgtggtcggcataaaggtcaaagggctaaatcatgaagaaagtattgagctt
gtggagaatttcctcatgcaattcgatgaattaaaaaagaaacaagaaggcgaggcagta
gctgatgtggccaactaa
DBGET
integrated database retrieval system
