Amycolatopsis thermalba: L1857_07725
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Entry
L1857_07725 CDS
T08681
Name
(GenBank) DEAD/DEAH box helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
athm
Amycolatopsis thermalba
Pathway
athm03420
Nucleotide excision repair
athm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
athm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L1857_07725
03430 Mismatch repair
L1857_07725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
athm03400
]
L1857_07725
Enzymes [BR:
athm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L1857_07725
DNA repair and recombination proteins [BR:
athm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L1857_07725
MMR (mismatch excision repair)
Other MMR factors
L1857_07725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Replic_Relax
NYN
Motif
Other DBs
NCBI-ProteinID:
UQS22714
LinkDB
All DBs
Position
1565417..1568638
Genome browser
AA seq
1073 aa
AA seq
DB search
MTEIASPAEIAHALGLHPPTPEQAAVIAAPIEPALVVAGAGAGKTETMAARVVWLVANGF
VTPERVLGLTFTRKAARQLADRVRARLRRLAGSGLLDRLDPGGARRAAVLAGEPTVLTYH
AYAGRLLAEHGLRLPVQPGVRLLSETSSWQLAHRVVSTWDEDLDTDRVPASVTAQLLALT
GELGEHLVTEEKLAEYTRWLCDLIERAPRAKGQRAAMPKSLTDIIAAQKFRLSLIPLIEE
YQRRKRAEGALDFADQMSLAATLADQHPAVAEGERARYGAVLLDEYQDTGHAQRILLRAL
FGGVENEPLPVTAVGDPAQAIYGWRGASAANLPRFTTDFPRPGLEPAHEYGLLTSFRNPA
EVLVLANGIAEPLRRRGLGVERLRARDNADPADIEVALLPDIRTEREWVADAVARRWFAH
QDEHGAPPTAAVLVRRRADMAPIAAELRARGLPVEVVGLGGLLDEPEVADLVATLRVLAD
PLAGTAAARLLTGARWRLAAADLAALWRRANEISAPPPTEESKVDELFAERAEQTGLIDA
LDDPGDPKRYSPEGYRRIRQLGQELAALRRRLDQSLPELVADVERTMLLDVEAQARPGSA
RRAHLDAFADVVTDFAETSPTATLMSFVDYLATAAHAEDGLTPGEVEVVPDRVQVLTVHS
AKGLEWEVVAVPHLAREVFPNKRRSSSWLRTVTSLPAALRGDSADLPKLRVSDGMDRKEV
IEAFEIHEQDFAEREADEERRLCYVALTRSERALVVSGHWWNETSTRPKGPSDFLLEVGE
LAADGVGKVAAWAEEPPADEENPLVSQARTAHWPSDPLTGRRDAVHEGADLVRTALADGE
VEEDEDEDDPDGWIADTDVLLAEYAKRAGTADQVALPDHLSVSQLVELAADPAGLARRLR
RPLPVPPNTFARRGTAFHGWLERRFAGDRLFDLDELPGAADPDEAGDDALEALQEAFDRS
AWASRTPHEVEVPFSTEVDGVTVRGRMDAVFADPDGGWTVVDWKTGAVPEEGRMASLAVQ
LAAYRLAWASLSGTPLEKVRAAFHYVREDHTVRPVDLLDADGLRDLLRSVPQP
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagatcgcctccccggccgagatcgcgcacgcgctcggcctgcacccgcccacc
ccggagcaagcggcggtcatcgcggcgcccatcgagcccgcgctcgtcgtcgcgggggct
ggggccgggaagaccgagaccatggccgcccgggtggtctggctcgtcgccaacgggttc
gtcaccccggagcgcgtcctgggcctcacgttcacccgcaaggccgcccgccagctcgcc
gaccgcgtccgcgcccgcctgcgccgtctcgccggctccggcctcctcgaccggctcgac
ccgggcggcgcgcgccgggccgcggtgctcgccggggaacccaccgtcctcacctaccac
gcctacgccggccgcctcctcgccgagcacggcctgcgcctgcccgtgcaacccggcgtc
cgcctgctctccgaaaccagctcctggcagctcgcccaccgcgtggtgtcgacctgggac
gaagacctggacaccgaccgcgtccccgcctcggtcaccgcgcaactcctcgccctcacc
ggcgaactcggcgaacacctggtcaccgaagagaaactcgccgagtacacccgctggctg
tgtgacctcatcgaacgcgccccgcgcgccaagggccagcgcgccgcgatgcccaagtcg
ctgaccgacatcatcgccgcgcagaagttccgcctctcgctcatcccgctcatcgaggag
taccagcgccgcaaacgagccgagggcgcactcgacttcgccgaccagatgtccctcgcc
gcgaccctcgccgaccagcacccggccgtcgccgagggcgaacgcgcccgctacggcgcc
gtcctcctcgacgagtaccaggacaccggccacgcccagcgcatcctgctgcgcgcgctc
ttcggcggcgtcgagaacgagccgctgccggtcaccgcggtcggcgaccccgcacaggcc
atctacggctggcgcggcgccagcgcggccaacctgccccgcttcaccaccgacttcccg
cgcccgggcctcgaacccgcccacgagtacggcctgctcaccagcttccgcaaccccgcc
gaggtcctcgtcctcgccaacggcatcgccgaaccgctgcgccggcgcggcctcggcgtc
gaacggctccgcgcccgcgacaacgccgaccccgccgacatcgaggtcgccctgctgccg
gacatccgcaccgaacgcgaatgggtcgccgacgccgtggcgcgcaggtggttcgcccac
caggacgagcacggcgccccgcccaccgccgccgtcctcgtccgccgccgcgccgacatg
gccccgatcgccgccgagctgcgggcccgcggcctgccggtcgaggtcgtcggcctcggc
gggctcctcgacgaacccgaggtggccgacctcgtcgccaccctgcgcgtcctcgccgac
ccgctcgccggcaccgccgccgcccgcctgctcaccggtgcccgctggcgcctcgcggcc
gccgacctcgccgcgttgtggcggcgcgccaacgagatctccgcgcccccgcccaccgaa
gagtccaaggtggacgagctgttcgccgaacgcgccgagcagaccggcctcatcgacgcg
ctcgacgacccgggcgaccccaagcgctactccccggagggctaccgccgcatccggcaa
ctcggccaggaactcgccgcgctgcgccgccgcctcgaccagtcgctgcccgagctggtc
gccgacgtcgaacggaccatgctgctcgacgtggaagcgcaggcccgccccggcagcgcc
cgccgcgcccacctggacgccttcgccgacgtggtcaccgacttcgcggagacctcgccc
accgccaccctgatgtccttcgtggactacctggcgaccgccgcgcacgccgaggacggc
ctcaccccgggcgaggtcgaggtggtgccggaccgcgtgcaggtgctgaccgtccactcc
gcgaagggcctggagtgggaggtcgtcgccgtgccgcacctggcgcgcgaggtcttcccc
aacaagcgccggtcctcgtcctggctgcgcaccgtcacgtcgctgcccgccgcgctgcgc
ggtgactccgcggacctgccgaagctgcgcgtgtccgacggcatggaccgcaaggaggtc
atcgaggcgttcgagatccacgagcaggacttcgccgagcgcgaggccgacgaggaacgc
cgcctctgctacgtcgcgctgacccgctccgagcgcgcgctcgtcgtgtccgggcactgg
tggaacgagacgagcacccgtcccaagggcccctcggacttcctgctggaggtcggcgaa
ctggccgccgacggcgtcggcaaggtcgccgcgtgggccgaggaaccaccggccgacgag
gagaacccactggtcagccaggcccggacggcgcactggccgtccgacccgctgaccggc
cgccgcgacgccgtgcacgagggcgccgacctggtccgcaccgcgctggccgacggcgag
gtcgaggaggacgaggacgaggacgatccggacggctggatcgccgacaccgacgtgctg
ctcgccgagtacgccaagcgcgccggcaccgccgaccaggtcgcgctgcccgaccacctg
tcggtgagccagctcgtcgagctcgccgcggacccggccggactcgcgcgccgcctgcgc
cgcccgctgccggtgccgcccaacaccttcgcccgccgcggcaccgccttccacggctgg
ctggagcgccgcttcgccggtgaccggctgttcgacctcgacgagctgcccggcgccgcc
gacccggacgaggccggcgacgacgcgctcgaagcgctgcaggaggccttcgaccgcagc
gcctgggcgtcgcgcacgccgcacgaggtggaggtgccgttctccaccgaggtggacggc
gtgaccgtgcgcgggcggatggacgccgtgttcgccgatccggacggcggctggaccgtc
gtggactggaagaccggcgccgtgcccgaggagggccggatggcctcgctcgccgtgcag
ctggcggcgtaccgtctggcttgggcgtcgctgtccggaacgccgttggagaaggtgcgc
gccgccttccactacgtgcgcgaggaccacacggtgcgcccggtggacctgctcgacgcg
gacggtctgcgcgatctgctccgcagcgtgccacagccctag
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