Amycolatopsis thermalba: L1857_09350
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Entry
L1857_09350 CDS
T08681
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
athm
Amycolatopsis thermalba
Pathway
athm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
athm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L1857_09350 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
athm03021
]
L1857_09350 (rho)
03019 Messenger RNA biogenesis [BR:
athm03019
]
L1857_09350 (rho)
Transcription machinery [BR:
athm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
L1857_09350 (rho)
Messenger RNA biogenesis [BR:
athm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
L1857_09350 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
UQS23007
UniProt:
A0ABY4NSI1
LinkDB
All DBs
Position
1904360..1906336
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AA seq
658 aa
AA seq
DB search
MSNTDLLSGDVAAAATNAEPGESNGTAAPKRRSGGLSGMVIADLRELATQLGIGDTKGMR
KGDLIAAIRERQGKAPRKRAADETLPLDGIAAKVEAPAQAESAQTESAQTKPAEKAPRQA
EAPAEKPAPVVEKADKPAPADKPGNGAEAPQQAEDGPRREGGARRRRGANRAAGSPDNRG
GNDNRGGNDQREQRGGNDQQRGGDQSQQGGGDQRRQNNRDSGSGGGQSKQNAGGGQNSGG
GQNNADDDEGGRRGRRFRDRRRRGGNRGEGGADTEIREDDVLLPVAGILDVLDNYAFVRT
SGYLPGPNDVYVSLSLVRKHGLRRGDAITGVVKQPREGEQQRQKFNPLVRVDSVNGLDPE
EAKRRPEFTKLTPLYPNERLRLETEPHKLTTRVIDLVMPVGKGQRALIVSPPKAGKTTIM
QDIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELSIE
RAKRLVEMGMDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALFPPKRFLGAARNIE
NGGSLTIFATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKE
ELLLSPDELAVTHKLHRVLHALDSQQAIDLLLSRLRKTKTNIEFLMQVSKTALASDDD
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaccgatcttttgagcggcgacgtggcggccgccgcgacgaacgctgagcca
ggggagagcaacggcaccgccgcgccgaagcgccgcagtggcggcctgtccggcatggtg
atcgccgacctgcgggaactcgccacccagctgggcatcggcgacaccaaggggatgcgc
aagggcgacctgatcgccgcgatccgcgagcgccagggcaaggccccgcgcaagcgcgcc
gccgacgagaccctgccccttgacggcatcgccgcgaaggtggaggctcctgcccaggcc
gagtctgcccagaccgagtctgcgcagaccaagcccgccgagaaggcgccccggcaggcc
gaggcgccggccgagaagcccgctccggtggtggagaaggccgacaagcccgctccggcc
gacaagcccgggaacggcgccgaggcgccccagcaggccgaggacggcccgcggcgcgag
ggcggcgcccgccgtcgccgtggcgcgaaccgcgccgcaggcagcccggacaaccgcggc
ggcaacgacaaccgcggcggcaacgaccagcgcgagcagcgcggcggcaacgaccagcag
cgcggtggcgaccagtcccagcagggcggtggcgaccagcgcaggcagaacaaccgggac
tccggctccggtggcggccagtccaagcagaacgcgggcggcggccagaactccggtggc
ggccagaacaacgcggacgacgacgagggcggccgtcgcggccgccggttccgggaccgc
cgccgccgcggtggcaaccggggtgagggcggcgcggacaccgagatccgcgaggacgac
gtgctgctgccggtcgccggcatcctcgacgtcctggacaactacgcgttcgtgcgcacc
tcgggctacctgcccgggccgaacgacgtgtacgtgtcgctgtcgctggtccgcaagcac
ggcctgcgccgcggtgacgccatcaccggtgtggtcaagcagccgcgcgagggcgagcag
cagcgccagaagttcaacccgctggtgcgcgtcgacagcgtcaacggcctggacccggag
gaggccaagcgccgccccgagttcaccaagctgaccccgctctaccccaacgagcggctg
cgcctggagaccgaaccgcacaagctgaccacccgcgtgatcgacctggtcatgccggtc
ggcaaggggcagcgcgccctgatcgtgtcgccgccgaaggcgggcaagaccacgatcatg
caggacatcgcgaacgcgatcaccacgaacaaccccgagtgccacctgatggtcgtcctc
gtcgacgagcgtccggaagaggtcaccgacatgcagcggtcggtgaagggcgaggtcatc
gcctcgaccttcgaccgcccgccgtcggaccacacctcggtggccgagctgtccatcgag
cgcgccaagcgcctggtggagatgggcatggacgtggtggtcctgctcgactcgatcacc
cgtctgggccgcgcctacaacctggcggccccggcgtccggccggatcctctccggtggt
gtcgactcgaccgcgttgttcccgccgaagcgcttcctcggcgcggcgcgcaacatcgag
aacggcggctcgctgacgatcttcgccacggcgatggtcgagaccgggtccaccggtgac
acggtgatcttcgaggaattcaagggcaccggcaacgccgagctcaagctcgaccgcaag
atcgccgagcggcgcgtcttcccggcggtggacgtcaacccgtccggcacccgcaaggag
gagctgctgctctcgccggacgagctggcggtcacgcacaagctgcaccgggtcctgcac
gcgctggactcgcagcaggccatcgacctgctgctgtcccgcctgcgcaagaccaagacc
aacatcgagttcctgatgcaggtcagcaagacggctctggcgtccgacgacgactag
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