Amycolatopsis thermalba: L1857_11590
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Entry
L1857_11590 CDS
T08681
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
athm
Amycolatopsis thermalba
Pathway
athm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
athm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L1857_11590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
athm03019
]
L1857_11590
03400 DNA repair and recombination proteins [BR:
athm03400
]
L1857_11590
Enzymes [BR:
athm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L1857_11590
Messenger RNA biogenesis [BR:
athm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L1857_11590
DNA repair and recombination proteins [BR:
athm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L1857_11590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UQS23419
LinkDB
All DBs
Position
complement(2348908..2351013)
Genome browser
AA seq
701 aa
AA seq
DB search
MDLHLLRERAETLLRALAGDGATLRDDQWTAIEALVAHRRRALVVQRTGWGKSAVYFLAT
ALLRERGAGPTVIISPLLALMRNQITAAGRAGIHAATMNSANQQEWDDVQARIAAGEIDV
LLVSPERLNNPDFRDTVLPKLTTTAGLLVVDEAHCISDWGHDFRPDYRRLRTLLAGLPEG
VPVLATTATANDRVVTDVAEQLGLGQGGDALVLRGPLDRESLHLSVAKLPTPQARLAWLA
DRLGELPGSGIIYTLTVAAAHDIAEMLRERGFPVAAYTGKTEPAEREAAEDDLLANRVKA
LVATSALGMGFDKPDLGFVVHVGAPSSPIAYYQQVGRAGRGVRRAEVILLPGQEDAEIWR
YFSSLAFPDEQRVNQVLNALAYADRPLSTAALEPMVELSRSRLEMVLKVLDVDGAVRRVK
GGWEATGQDWHYERERYERVAQARRAEQQAMLEYQATTSCRMEFLRRQLDDPFAEPCGRC
DNCTGEHRDVTVSAEAVEKTDERLRRPGVEVGPRRQWPTGMGSLDVPLSGRIGKGELAEP
GRTLGRLTDVGWGGPLRELVGERATDGEVPEAVFQACVQVLAVWRWEQRPVAVVALPSAT
RPRLVHDLATRLAHIGRLRFLGTLESRGGRPRRANSAQRVADLWQSLAVPGDVAAELSGV
DGPVLLVDDLVDTGWTMTLAARLLRQGGAPAVLPFALASTN
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtggaccttcacctcctgcgcgaacgagccgaaacgctgctccgggcattggccggggac
ggcgcgaccctgcgcgacgaccagtggacagccatcgaagcgctggtcgcccaccgcaga
cgcgctctcgtcgtgcagcgcaccggctggggcaagtcggccgtgtacttcctggccacc
gccctactgcgcgagcgcggggcgggtccgacggtgatcatctccccgctgctggcgttg
atgcgcaaccagatcaccgcggccgggcgggccggcatccacgcggcgacgatgaactcg
gccaaccagcaggagtgggacgacgtgcaggcgcgcatcgcggccggcgagatcgacgtg
ctgctggtgagcccggagcggctgaacaacccggacttccgcgacacggtgctgcccaag
ctgaccaccacagcggggctgctggtcgtcgacgaggcgcactgcatctccgactggggc
cacgacttccggcccgactaccggcgcctgcgcaccctgctggcgggactgcccgagggg
gtgcccgtgctggcgaccaccgcgaccgccaacgaccgggtggtcaccgacgtcgccgaa
cagctcgggctcggccagggcggcgacgcgctggtgctgcgtggcccgctcgaccgggag
agcctgcacctgtcggtcgcgaagctgcccaccccgcaggcgaggctcgcctggctcgcg
gaccggctcggcgagctgccggggtccggcatcatctacacgctcaccgtcgcggcggcg
cacgacatcgcggagatgctgcgcgagcgcgggttcccggtcgccgcgtacacgggcaag
accgagccggccgagcgggaagcggcggaggacgatctgctcgccaaccgggtgaaggcg
ctggtggcgacttcggcgctgggcatggggttcgacaagcccgacctcgggttcgtcgtt
cacgtcggggcgccgtcctcgccgatcgcctactaccagcaggtcgggcgcgccggtcgt
ggcgtgcgccgggccgaggtgatcctgctgccgggtcaggaggacgccgagatctggcgg
tacttctcgtccctcgccttcccggacgagcagcgcgtcaaccaggtgctcaacgcgctc
gcctacgccgaccggccattgtcgacggcagcgctcgagccgatggtcgaactgtcccgg
tcacggctggagatggtgctgaaggtgctcgacgtggacggcgcggtgcggcgggtgaag
ggcggctgggaggcgaccgggcaggactggcactacgagcgcgaacggtacgagcgcgtc
gcccaggcgcggcgggcggagcaacaggcgatgctggagtaccaggccaccacctcgtgc
cggatggagttcctgcgccgccagctggacgacccgttcgccgagccgtgcgggcggtgc
gacaactgcaccggcgagcaccgggacgtgacggtgtcggcggaggcggtcgagaagacc
gacgagcggctccggcggccgggggtcgaggtgggcccgcgccgccagtggccgaccggt
atggggtcgctcgacgtgccgctgtccgggcggatcgggaagggcgagctggccgagccg
ggacggacgctcgggcggctgacggacgtcgggtggggcgggccgttgcgggagctggtc
ggcgagcgggcaacggatggtgaggtgccggaggcggttttccaggcgtgcgttcaggtt
ctggcggtctggcggtgggagcagcggccggtggccgtggtggcgctgccgtccgcgacc
cggccgcgactggtgcacgacctcgcgacccggctggcgcacatcggacggttgcgcttt
ctcggcacgctggaaagccgcggcggccgccctcgccgggcgaacagcgcgcagcgggtg
gcggatctgtggcaatcgcttgcggtgccgggcgatgtggccgcggagttgtccggtgtg
gatggaccggtgttgcttgtggacgatctcgtggacaccggctggacgatgacgctggcc
gcacggctcctgcgccagggcggggcgccggccgtgctgccgttcgcactggcgagcacg
aactga
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