KEGG   Amycolatopsis thermalba: L1857_19255
Entry
L1857_19255       CDS       T08681                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
athm  Amycolatopsis thermalba
Pathway
athm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:athm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    L1857_19255
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:athm03019]
    L1857_19255
Messenger RNA biogenesis [BR:athm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     L1857_19255
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 BKACE
Other DBs
NCBI-ProteinID: UQS27913
UniProt: A0ABY4P6W6
LinkDB
Position
complement(4000780..4002444)
AA seq 554 aa
MTRPPSLPDDALRIVALGGLGEIGRNMTVFEHQGALLVVDCGVLFPEEHQPGVDVILPDW
TAFRDRLSDITAIVLTHGHEDHLGAVPYLLAERPDVPVIGSRLTLSFLSAKLAEHRITPT
LIEVREGERLDRGPFALEFLAVNHSIPDGLAVAVRTRAGLVLHTGDFKMDQFPLDERITD
LRGFARLGEEGVDLFLVDSTNADVPGFTTSERELTPAIEAVFRTAPRRVIVSSFASHVHR
IQQVLDAAHAHGRKVAFVGRSMVRNMGLALQLGYLTAPDGLIVDARALDRLPDDKVTLVC
TGSQGEPMAALARMATGRHDIDVGDGDTVLLASSLIPGNENAIYRIINGLTARGANVVHK
GNAKVHVSGHASAGELVYCYNIVQPSNVVPVHGEARHLKANADLAVSTGVARDRVLIAGN
GEVVDLHDGRATITGTVPVREIYVDGHTVGVLTEDSLAERRALAQDGVLTVIALIDPDTG
LLAETPGFIARGFAPDESAFDSLAPVLEKALAGAAERAVTATDELERRIVRATESWARKT
LHRRPVVIPVLIDA
NT seq 1665 nt   +upstreamnt  +downstreamnt
atgacccgcccgccctcacttcccgacgatgcactacgcatcgtcgccttgggcggactg
ggcgagatcggccggaacatgaccgtgttcgagcatcagggcgccctgctggtcgtcgac
tgcggggtcctcttccccgaggagcaccagcccggggtggacgtgatcctgccggactgg
accgcgttccgtgaccggctctccgacatcacggcgatcgtgctcacgcacgggcacgaa
gatcacctcggtgcggtgccgtacctgctggccgagcggcccgacgtcccggtcatcggt
tcccggctgaccttgagctttctgtccgccaagctcgccgagcaccgcatcaccccgacc
ttgatcgaagtccgggaaggagaacggctcgaccgcggtcccttcgcactggaattcctc
gcggtcaaccactccatcccggacggtctcgccgtcgctgtgcgcacccgggccggcctg
gtgctgcacaccggcgacttcaagatggaccagtttccgctggacgagcgcatcaccgac
ctgcgcggcttcgcccgcctcggcgaggagggcgtcgatttgttcctggtggactccacc
aacgccgacgtccccgggttcaccacctccgagcgggaactgactccggctatcgaggcc
gtgttccgcaccgcgccgcgccgggtgatcgtctccagtttcgccagccatgtgcaccgc
atccagcaggtcctcgacgccgctcacgctcacggccggaaggtggccttcgtcggccgg
tccatggtccgcaacatgggtctggcgctgcagctgggctacctcaccgcaccggacggt
ctgatcgtcgacgcgcgggcgctggatcgcctgccggacgacaaggtgaccctggtctgc
accggatcgcagggcgagccgatggccgcgcttgcccgcatggccacgggccgtcacgac
atcgacgtcggtgacggggacaccgtactgctggccagttccctcatccccggcaacgag
aacgccatctaccggatcatcaacggactgaccgcacgcggtgcgaacgtcgtgcacaaa
ggcaacgccaaggtgcacgtgtccgggcacgccagcgccggcgaactggtctactgctac
aacatcgtccagccgtccaacgtcgtgccggtccacggtgaagcgcgacacctcaaggcg
aacgccgatctggcggtcagcaccggtgtcgcgcgtgatcgtgttctcatcgcaggcaat
ggcgaagtcgtcgatctgcacgacgggcgcgccacgatcaccggcaccgtcccggtgcgc
gaaatctacgtcgacggccacaccgtcggcgtgctgacggaggattccctggccgaacgg
cgcgccctcgcccaggacggcgtgctgaccgtgatcgcgctcatcgatcccgacaccggc
ttgctcgccgagacgcccggcttcatcgcccgcgggttcgcacccgacgagtcggcgttc
gactccctggccccggttctggagaaggccctcgccggtgcggccgaacgcgccgtcacc
gccaccgacgagctcgaacgccggatcgtgcgggccacggaatcctgggcacgcaagacg
ctgcaccgccggccggtcgtcatccccgtcctgatcgacgcctga

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