Amycolatopsis thermalba: L1857_26510
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Entry
L1857_26510 CDS
T08681
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
athm
Amycolatopsis thermalba
Brite
KEGG Orthology (KO) [BR:
athm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
athm03016
]
L1857_26510
Enzymes [BR:
athm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
L1857_26510
Transfer RNA biogenesis [BR:
athm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
L1857_26510
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
UQS26111
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Position
5460976..5462199
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AA seq
407 aa
AA seq
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MPDTSEPDVPVTLKEPADGTPDVVADEPALARACARLAAGTGAIAVDTERASGYRYWPKA
YLVQLRREGSGTVLVDPIALAGRLGPLRDVLNGQEWVLHAASQDLPCLAELDLVPGSLFD
TELAGRLAGYERVALGTLVERLLGYHLEKGHSAADWSKRPLPVDWLNYAALDVELLIPLR
EKLEAELAAQGKLDWARQEFEAVRTAPQPPPRSEPWRRTSGIHKVRTARGLAAVRALWEA
RDELARKRDRAPSRVLPDSAIVNAVLADPKSVAELQALPVFGGRVQRRYTGNWFRHLQAA
RQLPRDQLPNPAQPNDGPPPANRWADKDPDAAARLTAARAGLAKIAEHHQLPVENLLLPD
LLRRTCWRPPEDRSVAGVSAALAAGGARPWQVELTAPVMAKALQATA
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgataccagcgaaccggacgtcccggtcacgctcaaggagccggccgacgggacg
ccggacgtggtggcggacgagccggcgctggcgcgtgcctgcgcacggctggcggcgggc
acgggtgcgatcgcggtggacaccgagcgcgcgtccggctaccgctactggcccaaggcc
tacctggtgcagctgcgccgcgagggctccgggacggtcctggtggacccgatcgccctc
gcgggcaggctggggccgttgcgggacgtgctgaacggccaggagtgggtgctgcacgcc
gcctcgcaggacctgccgtgcctggccgagctggacctggtgccggggagcctgttcgac
accgagctggccggacggctggccgggtacgagcgcgtggcgctgggcacgctggtggag
cggttgctgggctaccacctcgagaagggccacagcgcggcggactggtcgaagcggccg
ctgccggtggactggctcaactacgcggcgctggacgtcgagctgctcatcccgctgcgg
gagaagctcgaggccgagctggctgcccagggcaagctggactgggcgcgccaggagttc
gaggccgtccggaccgccccgcagccccctccgcgcagcgagccgtggcggcgcacgagc
gggatccacaaggtgcgcaccgcgcgcggcctggcggcggtccgggcgctgtgggaggcc
cgcgacgagctggcccgcaagcgcgaccgcgcgccgagccgggtgctgcccgacagcgcg
atcgtgaacgcggtgctggccgacccgaagtccgtggccgagttgcaggcgctgccggtg
ttcggtggtcgcgtgcagcggcggtacaccgggaactggttccggcacctgcaggccgcc
cgtcagctgccgcgggaccagctgccgaacccggcgcagcccaacgacggcccacccccg
gcgaaccgctgggcggacaaggaccccgacgcggcggcgaggctgaccgcggcacgggcg
gggctggcgaagatcgccgagcaccaccagctgccggtggagaacctgctgctgccggac
ctgttgcgccgcacctgctggcggccgccggaggaccgcagtgtggcgggcgtgtcggcg
gcactggccgcgggaggcgcccggccgtggcaggtggagctgacggcaccagtgatggcg
aaggccctccaggcgactgcctga
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