KEGG   Amycolatopsis thermalba: L1857_26675
Entry
L1857_26675       CDS       T08681                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K03086  RNA polymerase primary sigma factor
Organism
athm  Amycolatopsis thermalba
Pathway
athm02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:athm00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    L1857_26675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:athm03021]
    L1857_26675
Transcription machinery [BR:athm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     L1857_26675
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 HTH_20
Other DBs
NCBI-ProteinID: UQS26140
UniProt: A0ABY4P193
LinkDB
Position
5496291..5497715
AA seq 474 aa
MIDRCERAYVAAAKTATRSGTKTTSAADVSAEPDAGRENVTEAEAQGSGATKKATTRKPA
AAKGPKKAPAKGRSTRKAGKTDDGEPDGPGGEEIEDVDLEADLADLESEVEVDVVDATVT
DEAEDLDEDEPDEKTPAKSGAKSTDRDFVWDEEESEALRQARKDAELTASADSVRAYLKQ
IGKVALLNAEEEVELAKRIEAGLYAAERLRVAEEEGEKLATQMRRDLRWIIRDGERAKNH
LLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQA
ITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQ
QYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGV
VRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq 1425 nt   +upstreamnt  +downstreamnt
gtgatcgaccgctgcgaaagggcgtacgtggcagccgcaaaaaccgctacccgaagcggc
acgaagacaacgagcgccgccgacgtgagcgcggaacccgacgcgggccgtgagaacgtg
accgaggccgaggctcagggctccggcgccacgaagaaggcgaccacccggaagccggcc
gcggccaagggcccgaagaaggctccggccaagggccgctccacccgcaaggccggcaag
accgacgacggggagccggacggccccggcggcgaggagatcgaggacgtcgacctcgaa
gccgatctcgccgacctcgagagcgaggtggaggtcgacgtcgtcgacgcgaccgtcacc
gacgaggcggaggatctcgacgaggacgagccggacgagaagacgccggccaagtcgggc
gccaagtcgaccgaccgcgacttcgtctgggacgaggaggagtcggaggccctgcggcag
gcccgcaaggacgccgagctcaccgcgtccgcggactcggtgcgcgcgtacctgaagcag
atcggcaaggtcgcgctgctcaacgccgaggaggaggtcgagctcgccaagcggatcgag
gccggcctgtacgcggcggagcggctgcgcgtcgccgaggaggagggcgagaagctcgcc
acccagatgcgccgtgacctgcgctggatcatccgggacggggagcgcgccaagaaccac
ctgctggaggcgaacctccggctggtcgtgtcgctggccaagcgctacaccggtcgcggc
atggcgttcctggacctgatccaggagggcaacctgggcctgatccgtgcggtcgagaag
ttcgactacaccaagggctacaagttctccacctacgcgacgtggtggatccggcaggcg
atcacccgcgccatggccgaccaggcgcgcaccatccgcattccggtgcacatggtcgag
gtgatcaacaaactcggccgcatacagcgtgagctgctgcaggacctcggccgcgagccc
acccccgaggagctcgcgaaggagatggacatctccccggagaaggtcctggagatccag
cagtacgcccgcgagccgatctcgctggaccagacgatcggcgacgagggcgactcgcag
ctgggcgacttcatcgaggactcggaagcggtcgtcgcggtcgatgcggtgtcgttcacg
ctgctgcaggaccagctccagtcggtgctgcagacgctgtccgagcgcgaggccggcgtg
gtccggctgcgcttcggcctgaccgacggtcagccgcggactttagacgagatcggccag
gtctacggcgtcacgcgcgagcgcatccgccagatcgaatcgaagaccatgtccaagctg
cgccaccccagccggtcgcaggtcctccgggactacctggactag

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