Amycolatopsis thermalba: L1857_26675
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Entry
L1857_26675 CDS
T08681
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
athm
Amycolatopsis thermalba
Pathway
athm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
athm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
L1857_26675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
athm03021
]
L1857_26675
Transcription machinery [BR:
athm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L1857_26675
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
UQS26140
UniProt:
A0ABY4P193
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All DBs
Position
5496291..5497715
Genome browser
AA seq
474 aa
AA seq
DB search
MIDRCERAYVAAAKTATRSGTKTTSAADVSAEPDAGRENVTEAEAQGSGATKKATTRKPA
AAKGPKKAPAKGRSTRKAGKTDDGEPDGPGGEEIEDVDLEADLADLESEVEVDVVDATVT
DEAEDLDEDEPDEKTPAKSGAKSTDRDFVWDEEESEALRQARKDAELTASADSVRAYLKQ
IGKVALLNAEEEVELAKRIEAGLYAAERLRVAEEEGEKLATQMRRDLRWIIRDGERAKNH
LLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQA
ITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQ
QYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGV
VRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgaccgctgcgaaagggcgtacgtggcagccgcaaaaaccgctacccgaagcggc
acgaagacaacgagcgccgccgacgtgagcgcggaacccgacgcgggccgtgagaacgtg
accgaggccgaggctcagggctccggcgccacgaagaaggcgaccacccggaagccggcc
gcggccaagggcccgaagaaggctccggccaagggccgctccacccgcaaggccggcaag
accgacgacggggagccggacggccccggcggcgaggagatcgaggacgtcgacctcgaa
gccgatctcgccgacctcgagagcgaggtggaggtcgacgtcgtcgacgcgaccgtcacc
gacgaggcggaggatctcgacgaggacgagccggacgagaagacgccggccaagtcgggc
gccaagtcgaccgaccgcgacttcgtctgggacgaggaggagtcggaggccctgcggcag
gcccgcaaggacgccgagctcaccgcgtccgcggactcggtgcgcgcgtacctgaagcag
atcggcaaggtcgcgctgctcaacgccgaggaggaggtcgagctcgccaagcggatcgag
gccggcctgtacgcggcggagcggctgcgcgtcgccgaggaggagggcgagaagctcgcc
acccagatgcgccgtgacctgcgctggatcatccgggacggggagcgcgccaagaaccac
ctgctggaggcgaacctccggctggtcgtgtcgctggccaagcgctacaccggtcgcggc
atggcgttcctggacctgatccaggagggcaacctgggcctgatccgtgcggtcgagaag
ttcgactacaccaagggctacaagttctccacctacgcgacgtggtggatccggcaggcg
atcacccgcgccatggccgaccaggcgcgcaccatccgcattccggtgcacatggtcgag
gtgatcaacaaactcggccgcatacagcgtgagctgctgcaggacctcggccgcgagccc
acccccgaggagctcgcgaaggagatggacatctccccggagaaggtcctggagatccag
cagtacgcccgcgagccgatctcgctggaccagacgatcggcgacgagggcgactcgcag
ctgggcgacttcatcgaggactcggaagcggtcgtcgcggtcgatgcggtgtcgttcacg
ctgctgcaggaccagctccagtcggtgctgcagacgctgtccgagcgcgaggccggcgtg
gtccggctgcgcttcggcctgaccgacggtcagccgcggactttagacgagatcggccag
gtctacggcgtcacgcgcgagcgcatccgccagatcgaatcgaagaccatgtccaagctg
cgccaccccagccggtcgcaggtcctccgggactacctggactag
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