Amycolatopsis thermalba: L1857_28435
Help
Entry
L1857_28435 CDS
T08681
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
athm
Amycolatopsis thermalba
Pathway
athm03030
DNA replication
athm03430
Mismatch repair
athm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
athm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L1857_28435
03430 Mismatch repair
L1857_28435
03440 Homologous recombination
L1857_28435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
athm03032
]
L1857_28435
03400 DNA repair and recombination proteins [BR:
athm03400
]
L1857_28435
Enzymes [BR:
athm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L1857_28435
DNA replication proteins [BR:
athm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
L1857_28435
DNA repair and recombination proteins [BR:
athm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
L1857_28435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
UVR
GIY_YIG_2
Motif
Other DBs
NCBI-ProteinID:
UQS26460
UniProt:
A0ABY4P286
LinkDB
All DBs
Position
5861472..5863181
Genome browser
AA seq
569 aa
AA seq
DB search
MHLADRAQLTFDELGTPLRDTTFVVFDLETTGTKPGPHGITEIGAVKVRGGEVLGEFATL
VDPGMPIPPQIVALTGITSAMLHDAPKIDRVLPAFLEFASGAVLVAHNAPFDTSFMRAAC
LHHGYAWPRPAVVCTVRLARRVLTRQDSPSFRLSALAALFGSPVTPNHRALEDARATVHV
LHALLERVGNVGVQSLEELLDYLPEVTPAQRRKRGLAAHLPERPGVYLFRGPGDEVLYVG
TASNLRRRVRQYFTGSDSRGRIREMVALAGRVDGIECSHALEAQVRELRLIAAHRPAYNR
RSKNPRKSWWIVLTDEAFPRLSVVRLPKDGALGPFSSQVTAKIAADALAGAVGLRTCTQR
ISAHSPSGRPCALAELGRCGAPCAGRQSVEEYSPGVHAIADLVAGRGTRPLDSARRQLDE
LAGAEHFEQAARRRDELAVLVRAVDRAHRLSSLAAIPELVAAAPDGNRGWEFAVIRHGRL
ASAGVARRGVPPMPVVEQLVASAETVEPGPGPLYGAPPEETSILLRWLTRPGVRLVRTAV
PWSEPAHGAGPWRGWLEQVATAVSLEQAG
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcacctggcggaccgcgcgcaactgaccttcgacgaactcggcacgccgttgcgggac
accaccttcgtggtgttcgacctggagaccaccgggaccaagccgggcccgcacggcatc
accgagatcggcgcggtcaaggtccgcggcggcgaggtgctgggtgagttcgccaccctc
gtcgacccggggatgccgatcccgccgcagatcgtcgcgctgaccggcatcacctcggcg
atgctgcacgacgcgccgaagatcgaccgcgtgctgcccgcgttcctggagttcgccagc
ggcgccgtgctggtcgcgcacaacgcgccgttcgacacgtcgttcatgcgcgcggcctgc
ctgcaccacggctacgcgtggcccaggccggccgtggtgtgcacggtccggctggcgcgc
cgcgtgctgacccggcaggacagtcccagcttccggctgtccgcgctggcggccctgttc
ggctcgccggtgacgccgaaccaccgcgcgctggaggacgcccgcgccaccgtccacgtg
ctgcacgcgctgctggagcgcgtcggcaacgtcggcgtgcagtccctggaggagctgctc
gactacctgcccgaggtgacgccggcccagcggcgcaagcgcggcctggctgcccacctg
ccggaacgcccgggcgtctacctcttccgcggcccgggcgacgaggttctctacgtcggc
acggcgagcaacctgcggcgccgcgtgcgccagtacttcaccggttcggacagccgcggc
cggatccgcgagatggtcgccctcgccgggcgggtggacggcatcgagtgcagccacgcc
ctggaggcccaggtccgggagctgcggctgatcgccgcgcaccggcccgcctacaaccgg
cggtcgaagaacccgcgcaagtcgtggtggatcgtgctgaccgacgaggccttcccgcgc
ctgtccgtggtgcggctgcccaaggacggcgcactcgggccgttctcctcacaggtcacg
gccaagatcgcggcggacgccctggccggcgccgtcggtctgcgcacgtgcacccagcgg
atctccgcgcactcgccgtccggccggccgtgcgcgctcgccgagctcggccggtgcggg
gcgccgtgcgccggacggcagagcgtcgaggagtactcccccggcgtgcacgcgatcgcc
gacctggtcgccggccgcggcacccggcccctggactcggctcggcgccagctggacgag
ctggccggggccgagcacttcgagcaggccgcgcggcggcgggacgagctcgccgtgctg
gtgcgcgccgtcgaccgggcccaccggctgtcgtcgctggccgccatcccggaactggtc
gccgcggccccggacggcaaccgcgggtgggagttcgcggtgatccggcacggcaggctg
gcctccgccggagtggcccgccggggtgtgccgccgatgccggtggtcgagcagctggtg
gcgtcggcggagacggtcgagccgggccccgggcccctctacggggcgccgcccgaggag
acctcgatcctgctgcgctggctcacccggcccggtgtgcggctggtgcgcaccgccgtg
ccgtggtcggagcccgcgcacggcgccggcccgtggcgcggctggctggagcaggtcgcc
accgccgtgtcgctcgagcaggccgggtag
DBGET
integrated database retrieval system
