Atrimonas thermophila: M15_16820
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Entry
M15_16820 CDS
T10752
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
atho Atrimonas thermophila
Brite
KEGG Orthology (KO) [BR:
atho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
atho03016
]
M15_16820
Enzymes [BR:
atho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
M15_16820
Transfer RNA biogenesis [BR:
atho03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
M15_16820
Prokaryotic type
tRNA splicing ligases
M15_16820
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Lig_C
Motif
Other DBs
NCBI-ProteinID:
BER92938
LinkDB
All DBs
Position
complement(1660968..1662425)
Genome browser
AA seq
485 aa
AA seq
DB search
MGEEWKGPLRKVDEWRWLIPRDYKKGMRTDGLIYASERMIRDIRKDQAPEQVANVACLPG
IVGKSLAMPDIHWGYGFPIGGVAATRVEDGVISPGGVGFDINCGVRMLVTSLEEKEVRPV
LDRLLRVLFRNIPSGVGSEGRISFSVSELRKVMEQGAQYIVKRGWGLPEDTECTEEQGAM
PGANPDKVSQKAIERGKDQLGSLGSGNHFLEIEVVETVFRPDVAEMFGLFKSQVVVMIHT
GSRGFGHQICTDSLNVMQSAMRKYGISLPDRQLACAPFNSEEGKAYFESMVCAANFAWAN
RQLITHWVRESFEEVFGKSAQELGIRVLYDVAHNIAKLEEHEVEGERVKVVVHRKGATRA
FGPGHPVLPQRYRNIGQPVLIPGDMGTGSFVLVGTERAMQETFGSTCHGAGRMMSRSEAD
RRSRGRDIAQEMEAKGVLVLAESKATLREEIPEAYKDVSQVVEVVDRAGLSRKVVYARPL
GVIKG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaggaatggaaggggcctttgcgaaaagttgatgaatggcggtggcttataccc
cgcgattataaaaagggcatgcgcactgacggactaatatatgcaagcgaaagaatgata
cgagatattcgcaaagaccaggcaccggagcaggtggccaatgtggcttgtctaccgggt
attgttggcaagtcacttgccatgccagatatccactggggttatggctttccgattgga
ggcgttgccgccactcgtgtcgaggacggcgttatttcgcccggaggagtgggatttgat
atcaattgcggagtacgaatgttggttacttctctggaagagaaagaagtcagaccagtg
cttgatagactcctgcgggttctttttaggaatattccctctggtgtaggttcggaagga
cgtatttctttttcggtgagtgaactgaggaaagttatggagcaaggtgcgcaatacatt
gtgaaaagaggatggggtcttcctgaggatacagagtgtactgaagagcagggtgctatg
cccggtgccaatcccgataaagtgagtcagaaagcgattgaacgaggtaaagaccagctg
gggtctcttggttcggggaatcactttttagaaattgaggtagtggaaacagtttttaga
cctgatgtggccgagatgtttggtctttttaagagtcaggttgtggtcatgatccacaca
ggatccagggggtttgggcatcagatttgcactgatagtctgaacgtgatgcagagtgct
atgcgcaagtatggcatttctcttcctgaccgacagttggcctgtgccccttttaatagt
gaggaaggcaaggcttattttgagagcatggtatgtgctgcaaatttcgcctgggctaac
cgccagcttattacccactgggttagagagtcgtttgaggaagtttttggaaaatctgct
caagagctgggcatcagagttctttatgatgtggcacataacatagcaaaacttgaagaa
cacgaagttgaaggagagagggttaaagtggtggttcaccgtaagggagctactcgtgct
tttggtccagggcatccggtgttgcctcaacgctaccggaatattggccagccggttttg
atacctggtgatatgggcacagggtcttttgtgctggttggtaccgaaagagcaatgcag
gaaacctttggttctacctgtcatggagcgggtaggatgatgagccgttccgaagcagac
cgcaggtcacgaggtagagacatagctcaggagatggaggccaaaggagtactggtgctt
gctgaaagcaaggcgacgcttcgtgaggaaataccagaagcctataaggatgtttcgcaa
gttgtagaggtggttgaccgggcgggtctttccaggaaggtggtttatgctcgtcctttg
ggcgtcattaaggggtag
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