Aliarcobacter thereius: ATH_0038
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Entry
ATH_0038 CDS
T07638
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
athr
Aliarcobacter thereius
Pathway
athr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
athr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATH_0038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
athr03019
]
ATH_0038
03009 Ribosome biogenesis [BR:
athr03009
]
ATH_0038
Enzymes [BR:
athr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATH_0038
Messenger RNA biogenesis [BR:
athr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATH_0038
Ribosome biogenesis [BR:
athr03009
]
Prokaryotic type
rRNA helicases
ATH_0038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QBF15137
LinkDB
All DBs
Position
36388..37902
Genome browser
AA seq
504 aa
AA seq
DB search
MTFNDFNFKENLKKAISEVGFTEPSPIQVEAIPHILEGKDIVGQAHTGTGKTAAFGLPIL
NKLGNKAVEALVIVPTRELAMQVSDELYKFGKYLGINTATVYGGQSYSRQLKLIESANII
VATPGRFLDLLRSEKIDVKPSFIILDEADEMLDMGFLDDIKEIFTYMPETRQTLLFSATM
PTAIKNLAKTILKEPEFVTITKSDVTNKNITQTFYVVDERERDDALIRLFDYKNPKKSII
FCRTKKDVDRLSTFLISQGFMAKALHGDMEQKQREEAIKAFKTSRLEVLIATDVAARGLD
VNDVTHVFNYHLPFDGESYVHRIGRTGRAGKDGMAISIVTPHEFKTLQRIEQTIGSKLES
KVVPNISTVKEKKIDELKQSIVEQEVKDHAIAIVESLSEEFDISTIAFKLASILSSKTYV
KGNNNIGKSESDLKRIAEILSKSINDSKGGFRNRRGGRNDGRRSNTRSSSGRRDSRGSDR
RTSDSRPERESSSRPRTQRPRKRD
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
gtgacttttaacgattttaattttaaagaaaatttaaaaaaagcaattagtgaagttggt
tttacagaaccaagtccaattcaagttgaagcaattccacatattttagaaggtaaagat
attgttggtcaagctcacacaggtacaggaaaaacagcagcatttggattaccaatttta
aataaattaggaaataaggcagttgaagctttagttattgttcctacaagagaacttgct
atgcaagtttcagatgaactttataaatttggtaaatatttaggaataaatacagcaaca
gtttatggtggacaatcatattcaagacaattaaaacttatagaaagtgctaatattatt
gttgcaactccaggaagatttttagatcttctaagaagtgaaaaaattgatgtaaaacca
agttttattatactagatgaagcagatgaaatgctagatatggggtttttggatgatatt
aaagagatttttacatatatgccagaaactagacaaacactacttttttctgcgacaatg
ccaacagctattaaaaatcttgcaaaaacaattttaaaagagccagaatttgtaactatc
acaaaatcagatgtaacaaataaaaatattacacaaactttttatgtggttgatgaaaga
gaaagagatgatgcgttaatcagactttttgattataaaaatccgaaaaaatctattata
ttttgtagaacaaaaaaagatgttgatagattatctacatttttaatatctcaaggtttt
atggcaaaagctttacatggggatatggaacaaaaacaaagagaggaagctataaaagca
tttaaaacatcaagacttgaagttttaatagcaacagatgtagctgcacgaggacttgat
gtaaatgatgtaactcacgtatttaattatcatcttccttttgatggtgaatcttatgtt
catagaattggaagaacaggacgagctggaaaagatggaatggcaatatcaattgtaact
ccacatgagtttaaaactcttcaacgaattgaacaaacaataggttcaaaacttgaatca
aaagttgttccaaatataagtacagtaaaagagaagaaaatagatgaacttaaacaaagt
attgttgaacaagaagtaaaagatcatgcaatagcaatagttgaaagtttaagtgaagag
tttgatatttctacaatagcatttaaacttgcatcaatattatcttcaaaaacttatgta
aaaggtaataataatattgggaaaagtgaatcagatcttaaaagaattgcagagatatta
agtaaatcaataaatgattcaaaaggtggtttcagaaacagaagaggtggaagaaacgat
ggtagaagaagtaatactagaagtagctcaggaagaagagatagcagaggttctgataga
agaacaagtgattcaagacctgaaagagagagctcttcaagacctagaactcaaagacca
agaaagagagattaa
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