Aliarcobacter thereius: ATH_0048
Help
Entry
ATH_0048 CDS
T07638
Name
(GenBank) mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
athr
Aliarcobacter thereius
Pathway
athr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
athr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATH_0048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
athr03019
]
ATH_0048
Messenger RNA biogenesis [BR:
athr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ATH_0048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
MupG_C
Motif
Other DBs
NCBI-ProteinID:
QBF15146
LinkDB
All DBs
Position
complement(47644..49674)
Genome browser
AA seq
676 aa
AA seq
DB search
MENINKEEISTETTSESTNQVKQNYKPREPRQAREPRAPRAPRTTNKDVKENNTTSNDEI
NNDSSDKKPEFKKRRPSKPRVFNNKNLPLSGDGWTNDLKKSYMINEKIHKDRLNPHYKLN
LNTSAKLRITPLGGLNEIGGNMMVVETENEAIIVDVGMSFPDADMHGVDILIPDFTYLRE
IKDKIVAVIITHGHEDHIGAMPYLYKEMQFPIYGSPLPLEMIGSKFDEHKMREHRALFRA
INKRVPIKIGNDFEVEWMHITHSIIDSSAIAIKTAAGTMIHTGDFKIDHTPYDGFPTDIH
RLAHYGEEGVLVLTSDSTNSHTPGFTKTEKAVAPTFERIFSTTKGRVIMSTFSSNIHRVA
QAIEKALKYGRKICVIGRSMEKNLDIAMTLGYIKFPKDQFIEAHEVGKYNDNEIMIVTTG
SQGESMSALYRMAIHEHRHIKIKPEDQIILSSKAIPGNEGSVSEIINHLLKAGANVAYQD
YSDIHVSGHAAQEEQKLMLRLVKPKFFLPVHGEYNHALKHSQTGIDCGVLERNVYIMADG
EQVEVSPKYLKKVRSVKSGKVYIDNTLNHKISDDVVIDRQNMAKEGIVMIVAQINENDKT
LAAKPKVASFGLISDKQDKFFVKEIEDILALFVENVKPGVFKNSRILEDELRKVVRKHCI
RKYKKYPMIVPTIFVQ
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatataaataaagaagagatttctactgaaactacaagtgaaagtacaaatcaa
gttaaacaaaactataaaccaagagagccaagacaagctcgtgaacctagagctccaaga
gcacctagaacaacaaataaagatgtaaaagagaataatactacatctaatgatgaaata
aataatgattcttcagataaaaaacctgaatttaaaaaaagaagaccatctaaaccaaga
gtttttaataataaaaacctaccactttcaggcgatggttggactaatgatttaaaaaaa
tcatatatgataaatgagaaaattcataaagatagattaaatcctcactataaattaaat
ctaaatacaagtgctaagcttagaattactccacttggtggattaaatgagattggtgga
aatatgatggttgttgaaactgaaaatgaagcaattattgtagatgttggaatgagtttc
ccagatgcagatatgcatggagttgatattttaattcctgatttcacatatttaagagag
attaaagacaaaattgtagctgtaattataactcacggtcacgaagaccatataggtgca
atgccatatttatataaagagatgcaatttcctatttatggttcaccacttcctttagag
atgattggaagtaaatttgatgaacataaaatgagagagcatagagcactttttagagct
ataaataaaagagttccaattaaaataggtaatgattttgaagttgagtggatgcatatt
actcactcaattattgattcatcagcaattgccataaaaacagctgctggaacaatgatt
catacaggagattttaaaatagatcatactccttatgatggttttccaactgatattcat
agacttgctcattatggtgaagagggtgttttagttttaacttctgattcaacaaactct
catacaccaggttttacaaaaactgaaaaagcagttgctcctacatttgaaagaatattc
tcgacaacaaaaggtagagttattatgagtactttctcttcaaatattcatagagttgca
caagctattgaaaaagctctaaaatatggaagaaagatctgtgttataggtagatctatg
gagaaaaacctagacattgcaatgactttaggttatattaaatttccaaaagatcaattc
atagaagctcatgaagttggaaaatataatgataatgagattatgattgtaacaacagga
agccaaggtgaatctatgagtgccttgtatagaatggcaattcatgaacatagacatatc
aaaattaaacctgaagaccaaataattttatcttcaaaagcaattccaggaaatgaagga
agtgtttctgagattattaatcatcttttaaaagctggagcaaatgttgcttatcaagat
tatagtgatattcacgtatctggacatgctgctcaagaagaacagaaattaatgctaaga
cttgttaagcctaaattctttttacctgttcatggggaatacaatcatgctttaaaacac
tctcaaacaggtattgattgtggtgttttagaaagaaatgtttacatcatggctgatggt
gaacaagttgaagttagtccaaagtatcttaaaaaagtaagatctgtaaaaagtggtaaa
gtatatattgataatactttaaatcataaaatttctgatgatgttgttattgatagacag
aatatggcaaaagagggaattgtaatgattgttgctcaaatcaatgaaaatgataagaca
ttagctgctaaaccaaaagttgctagtttcggtttgatttctgataaacaagataaattc
tttgttaaggaaattgaagatattctagctctatttgttgaaaatgttaaaccaggtgta
ttcaaaaacagtagaattttagaagatgaattaagaaaagtagtaagaaaacattgtata
agaaaatataaaaaatatccaatgattgttcctacaatatttgtacaataa
DBGET
integrated database retrieval system
