Aliarcobacter thereius: ATH_0668
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Entry
ATH_0668 CDS
T07638
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
athr
Aliarcobacter thereius
Pathway
athr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
athr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ATH_0668 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
athr03021
]
ATH_0668 (rpoD)
Transcription machinery [BR:
athr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ATH_0668 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QBF15741
LinkDB
All DBs
Position
complement(630141..632015)
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AA seq
624 aa
AA seq
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MSVKDINKTIEQLIKEYKDSTLTYEKLIKIFPKTPNAATIKKILALLQLYNVKVLSSQEQ
AKHLNDEEAKKRREQREKLIEAEDDEFDLLKNKELLEWSRSDSPVRMYLREMGQIPLLTK
DEEVEISKKIEMGEDIILDAICYVPYLIDFILEYKEPLVNRERKVKELFKNFDDDTEEEE
EEVDLDTEEDEYSDDFEDSDKKTTGTKQKKLDKRAQTIVDAFKNLEKQKKEWLKFQAKET
AKSDDEVDLMTFNLNTAFRKKQVKEALLDLGPTSKLITEIVRAMETALKSDDGFETELKR
LEYKLPLFNENLQKNHQKILENIINLSKAQITAMVPEATMVSTYMEIKKLFQTEEASKDG
FDLTPEELKAVLEQIKRGKRITDTSKDRMAKSNLRLVVSIAKRYTNRGLAFLDLIQEGNI
GLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIIRKG
IQENGKEPDVEEISKEVGLPVDKVKQVIKITKEPVSLEAPIGSDDDGKFGDFVPDEKAPT
PIDNIMKEDLQGQIDQILGQLNEREQAVIRMRFGLMEDASDRTLEEIGKELSVTRERVRQ
IESSAIKKLKHPKVGKNLKNYVES
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtaaaagatataaataagaccattgagcaactgattaaagagtataaagattca
actttaacttatgaaaaattaattaagatttttcctaagactccaaatgctgcaactatt
aaaaaaattttagcactacttcaactttacaatgtaaaagttttaagttctcaagaacaa
gcaaaacatttaaatgatgaagaagcaaaaaaaagaagagaacaaagagaaaaactaatt
gaagcagaagatgatgaatttgacttacttaaaaataaggaacttttagagtggtcaaga
tctgattcccctgtaagaatgtatttaagagagatgggacaaattcctcttttaacaaaa
gatgaagaggtagaaatctctaagaaaatagagatgggagaggatattatccttgatgct
atttgttatgttccttatcttattgattttattttagagtacaaagaacctttagtaaat
agagaaagaaaagtaaaagaactatttaaaaattttgatgatgatactgaagaggaagaa
gaggaagtagatttagatactgaagaagatgaatattcagacgattttgaggatagtgac
aaaaaaacaactggaacaaaacaaaaaaaacttgataaaagagctcaaactattgttgat
gcttttaaaaatttagaaaaacagaaaaaagagtggttaaagtttcaagcaaaagagaca
gctaaatctgatgatgaagttgatctgatgactttcaatttaaatactgcatttagaaaa
aaacaagttaaagaggctttacttgaccttggacctacttcaaaactaattacagaaatt
gtaagagctatggaaacagctctaaaaagtgatgatggttttgaaacagaattaaaaaga
ttagaatataaattacctctttttaatgaaaacttacaaaaaaaccaccaaaagatttta
gaaaatattattaatctttctaaagctcaaattactgcaatggtaccagaagctacaatg
gtttctacatatatggaaatcaaaaaactttttcaaacagaagaagctagtaaagatggt
tttgatttaactcctgaagagttaaaagcagttcttgaacagataaaaagaggtaaaaga
ataacagatacttcaaaagatagaatggcaaaatcaaatttaagattggttgtttctatt
gcaaaaagatatacaaatagaggtttggctttcttggatttaattcaagaaggaaatatt
ggtcttatgaaagctgttgataagtttgagtataaaaaaggttataaattctcaacttat
gctacttggtggattagacaagcaatttcaagagcaattgcagatcaagcaagaactatt
agaattccaattcatatgatagaaactattaatagaattaataaaattattagaaaaggt
attcaagaaaatggtaaagaaccagatgttgaagagatttcaaaagaggttggacttcct
gttgataaagtaaaacaagtaatcaaaatcacaaaagagcctgtatctttagaggctcct
attggaagtgatgatgatggtaaatttggagattttgtaccagatgaaaaagcaccaacg
cctattgataatattatgaaagaagatttacaaggtcaaattgatcaaattcttgggcaa
ttaaatgagagagaacaagcagttataagaatgagatttggtcttatggaagatgcaagt
gatagaactcttgaagagattggaaaagaactttcagttacaagagagagagttagacaa
attgaatcaagtgctattaaaaaattaaaacacccaaaagttggtaaaaaccttaaaaac
tatgtagagagttaa
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