Aliarcobacter thereius: ATH_1612
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Entry
ATH_1612 CDS
T07638
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
athr
Aliarcobacter thereius
Pathway
athr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
athr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ATH_1612 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
athr03400
]
ATH_1612 (mfd)
Enzymes [BR:
athr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATH_1612 (mfd)
DNA repair and recombination proteins [BR:
athr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ATH_1612 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
TsaE
Helicase_RecD
GpA_ATPase
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QBF16633
LinkDB
All DBs
Position
complement(1553451..1556438)
Genome browser
AA seq
995 aa
AA seq
DB search
MKNIYEFLKSLKDEKSLKKCQLLIVNDDSQAIKASHIVSFLGFKPFVLSDFRANFKDDLH
SFSDEIQDITKALQEFYSYKKEDKILISPLRTISFPMPKKECFDSFTINFADKLDLNSFK
QKLYNWGYYFVDIVTSAGEVSLRGDIFDIAMLGSDFGYRVSLFDDEVESIRIFDIEDQKS
QKEELESITITPAFLSLSEDGFEDINEKIELSSSDAFVKDIHSLGFWYLDNLADYLPQNM
NSFITQEALNELDEAYIFEEKRLNKDKFLATPQIYSSKEYKEISPSNIKEFITFHKDKKI
TLISSSEARIKSLDLALDDKSIKYHFSDEIINILGKNELIISLNKEVKRRRKKRVKLVVD
ELVLNDFVVHEKHGIGIYKGIEPVSIMGAKRDFVIINYQGEDRLLIPVENIDTIDRYVAD
GESYAIVDKLGRGSFTKLKEKVKDRLFEIANDIIKLAAARELINGIKIFIDDFLIKRFQN
SAGFTYTKDQTRSINEIFSDISSGKVMDRLLSGDVGFGKTEVAMNALLAVISSGYQAVFV
CPTTLLASQHYNSISKRFKEFGIDVYKLDGKTTTKEKNSIKKGLEDGSVKFVIGTHSLLD
IKTSNLALVIVDEEHKFGVKQKEKLKGLREDVHIFSMSATPIPRTLNLALSKLKGMSSLL
TPPSERLGVRTFVKEYNDGLIKEIILREKRRGGQLFYVHNNIASIEAKKKDLLELMPNIK
VEIIHSQIKANETEKIVESFENKEFDILLATSIVESGIHLPNANSIIIESADRFGIADLH
QLRGRVGRSNKEGYCYYVVEDKSKITPEAIKRLVALESNSYLGSGTALAHQDLEIRGGGN
IIGAEQSGHIKQIGYGLYLKMLEDTLAILSGEEKNKEKNIDIKLAISAFISEDYISEDRV
RLELYRRLSRSTSKETLYEIEEEMEDRFGKLDIPTKQFMDLILIKILALEKGINQISSYE
TNITFVKDDGIKNSIKARSRDDDDIINSTLEYLRR
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaatatatatgaatttttaaaaagtttaaaagatgaaaaaagtttaaaaaagtgc
caacttttaatagtaaatgatgattcacaagcaataaaagcttcacatatcgtctctttt
ttaggtttcaagccttttgttttatcagattttagagcaaatttcaaagatgatttacac
tcttttagtgatgaaatacaagatattacgaaggctttacaagagttttattcctataaa
aaagaggataaaattcttatctctcctttacgaacaatttcatttcctatgccaaaaaaa
gagtgttttgatagttttacaattaattttgcagataaattagatttaaatagttttaag
caaaagctttataattggggttattattttgtagatattgttacaagtgcaggagaggtt
tctttaagaggagatatatttgatatagcgatgcttggaagtgattttggatatagagtt
agcttatttgatgatgaggttgaaagtattagaatctttgatattgaagaccaaaaatca
caaaaagaggagcttgaaagtatcacaatcacaccagcttttttatctttaagtgaagat
ggttttgaagatataaatgagaaaatagaacttagttcaagtgatgcctttgtaaaggat
attcactcattaggattttggtatttagataatctagcagattatttaccacaaaatatg
aacagctttatcactcaagaagctctaaatgagctagatgaagcatatatttttgaagag
aaaagattaaataaagataagtttttagcaactccacaaatttattcaagtaaagagtat
aaagagataagtccatcaaatataaaagagtttataacttttcataaagataaaaaaatt
actttgattagttcaagtgaagctagaataaaatctcttgacttagcacttgatgataaa
tctataaagtatcattttagtgatgagattataaatattttaggaaaaaatgaacttata
atttctttaaataaagaagttaaaagaagaagaaaaaaaagagtaaaactagtagttgat
gagcttgttttaaatgattttgtagttcatgaaaagcatggaataggtatttataaaggt
attgaaccagtttcaattatgggagcgaaaagagattttgtaattataaattatcaagga
gaagatagacttttaattcctgttgaaaatattgatactattgatagatatgtagccgat
ggtgaaagttatgcaatagttgataaacttggtcgaggaagctttacaaaacttaaagag
aaagtaaaagatagactttttgaaatagcaaatgatattataaaactagcagctgctaga
gaacttataaatgggattaaaatttttatagatgattttttaatcaaaagatttcaaaat
agtgcaggttttacatatacaaaagaccaaacaagaagtataaatgagattttttctgat
attagtagtggaaaagttatggatagacttttaagtggtgatgttggttttggtaaaaca
gaagttgctatgaatgcacttttagctgttatttcaagtggttaccaagctgtttttgta
tgccctacaactttacttgcttctcagcactacaactcaataagcaaaagatttaaagag
tttggaatagatgtttataaacttgatggaaaaactacaacaaaagagaaaaatagtatt
aaaaaagggcttgaagatggaagtgtaaaatttgttattggaactcactctttacttgat
ataaaaacttcaaatcttgccttagtaattgtagatgaagagcataagtttggtgtaaaa
caaaaagagaaactaaaaggacttagagaagatgttcatatattttcaatgagtgcaact
ccaattccaagaactctaaatctagccttatcaaaactaaaaggaatgagtagtttactt
acacctccaagtgaaagattgggtgtacgaacttttgtaaaagagtacaatgatggactt
ataaaagagataatattaagagaaaaaagaagaggtggacagcttttttatgtacataac
aatatagcttctattgaagcaaagaaaaaagatctgcttgaacttatgccaaatataaaa
gtagagataattcactctcaaataaaagcaaatgagactgaaaagattgttgaatctttt
gaaaacaaagagtttgatattttacttgcaacttctattgtagaaagtggaatacatctt
ccaaatgcaaattcaataataattgagagtgcagatagatttggaattgctgatttacat
caattaagaggaagagttggacgaagtaacaaagagggatattgttattatgttgttgaa
gataaaagtaaaattactcctgaagctataaaaaggttggttgctttagagtcaaattca
tatttaggaagtggaacagcacttgcacatcaagatttagaaataagaggtggtgggaat
attataggtgctgaacaaagtggacatataaaacagattggttatggtttgtatcttaaa
atgcttgaagatactttggcaatattaagtggagaagagaaaaacaaagagaaaaatatt
gatattaaacttgctattagtgcttttattagtgaagattatataagtgaagatagagta
agacttgagctatatagaagattaagccgttcaactagtaaagaaacactttatgaaata
gaagaagagatggaagatagatttggaaaacttgatattcctacaaaacagtttatggat
ttaattttgattaaaatcttagctttggaaaaaggaataaatcaaataagctcttatgaa
acaaatataacatttgtaaaagatgatggaataaaaaatagtataaaagcaagaagtcgt
gatgatgacgatattataaatagtacattagaatatttaaggagataa
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