KEGG   Azospirillum thiophilum: AL072_03265
Entry
AL072_03265       CDS       T04091                                 
Name
(GenBank) recombinase RecD
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
ati  Azospirillum thiophilum
Pathway
ati03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ati00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    AL072_03265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ati03400]
    AL072_03265
Enzymes [BR:ati01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     AL072_03265
DNA repair and recombination proteins [BR:ati03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AL072_03265
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_RecD2 OB_YrrC SH3_13 UvrD_C_2 HHH_5 Viral_helicase1 AAA_11 PIF1 HHH_2 NTPase_1 nSTAND3 Helicase_RecD AAA_16 RsgA_GTPase AAA_22 NPHP3_N AAA_28 AAA_29 CbiA MeaB HHH UvrD-helicase T2SSE NACHT SRP54 AAA ABC_tran ATP_bind_1 AAA_5 DUF4314 UvrD_C ATPase_2 cobW TrwB_AAD_bind NB-ARC Pox_A32 SLFN-g3_helicase MobB DEAD TsaE DnaB_C AAA_24 KTI12 AAA_14 MMR_HSR1 P-loop_TraG Thymidylate_kin Mg_chelatase
Other DBs
NCBI-ProteinID: ALG70098
UniProt: A0AAC8VVK4
LinkDB
Position
1:complement(726707..728935)
AA seq 742 aa
MPHSPAVEHREFLSGLIERVTYHNPENGYCVLRVKARGHRDLVTLIGHAASIQPGEWAQA
SGNWEVHREHGQQFRATHLKTAQPTSLEGIEKYLGSGLIKGIGPVYARKLVKAFGEAVFD
IIEQDPSRLSEVTGIGPKRAAKITSAWADQKAIREIMVFLQSHGVGTSRAVRIFKTYGVD
AIALVTENPYRLARDIRGIGFKTADMIAEKLGIPQDAMIRARAGISYTLLEAVDDGHCGL
PRDDLLTTAEKLLEIPVAILEDAIRLELDDGVVVADQVADQDCVFLRRLWEAERVIAGRV
ALLREGEPPWPSVDADKAIPWVEGKLGVSLAASQKDAVRMALASKLMVITGGPGVGKTTL
VNSILKILAAKGVHVLLAAPTGRAAKRMTEATGMEAKTIHRLLEFDPTTGGFRRNEEMPL
QCNLLVLDETSMVDVPLMASVLRAVPAKAAVILVGDVDQLPSVGPGQVLADTIESEAVPV
VRLTEVFRQAATSQIITNAHRINAGQMPVLTPPKDGETTDFYFVDTADAEDAVRKVVEIV
QHRIPRRFGFDPIRDIQILTPMNRGGLGARTLNLALQAALNPAVDQPAVERFGWTYRPGD
KVMQVENDYDKEVYNGDLGLVTAIDPDAQQVVINFDGRDVVYIFGELDEVSLAFATTIHK
SQGSEYPAVVIPIGMPHFMMLKRNLIYTGVTRGKKLVVLVGQRRAVGLAVRTAEDGRRWS
KLREILKKPVPVKNQAGTWLTS
NT seq 2229 nt   +upstreamnt  +downstreamnt
atgccgcattcacccgcagtcgaacaccgggaattcctctcgggcctgatcgaacgggtc
acctaccacaaccccgagaacggctactgcgtgctgcgggtaaaggctcgtggccaccgg
gacctcgtgaccctcatcggccatgccgcctcgattcagcccggtgaatgggcacaggcc
agcggcaactgggaggtccaccgagaacacgggcagcagttccgggcgacgcacctgaaa
acggcccaaccgacctccctggagggaatcgagaagtacctgggttccgggctaatcaag
ggcatcggcccggtgtacgccaggaagctggtgaaggcgttcggcgaggcggtgttcgac
atcatcgaacaggacccgagtcgtctgtccgaggtcacaggcattgggccgaagcgggcc
gccaagatcacctcggcctgggccgaccagaaggcgattcgggagatcatggtcttcctc
caaagtcacggtgtcgggacctcgcgggccgtgcggatctttaagacctatggggtggac
gccatcgcccttgtgaccgagaacccctaccggttggcccgtgacatccggggcatcggc
ttcaagactgccgatatgatcgcggagaagttgggtatcccgcaggacgccatgatccgg
gccagggcgggcatctcctacaccctgcttgaggcggtcgatgacggccactgcggattg
cccagggacgacctactcaccacggcggagaagctcctggagatcccggtggcgatcctg
gaggacgcgatccggctcgaactcgacgacggtgtagtcgtcgccgaccaagtggctgat
caagactgcgtattcctccgccggctttgggaggccgagcgggtgatcgccggcagggtt
gcgttgctgcgggagggggagccaccttggcccagtgtcgacgctgacaaggccattccg
tgggttgaggggaagctcggcgtcagcctcgccgcgagccagaaggacgcggtcaggatg
gccctggcgtcgaagctcatggtgatcactggggggccgggcgtcggcaagaccacctta
gtgaattcgatcctgaagatcctggcggccaaaggcgttcatgtcctcctcgccgctccg
accggccgggctgcgaagcggatgactgaggcaaccggcatggaggccaagacgatccac
cgcctgttggaattcgaccccacgaccggcggcttccgccgaaacgaggagatgcccttg
caatgcaatctcctggtcctggacgaaacctcaatggtggacgttcccctcatggcgtcg
gtcctacgggctgtgccggcgaaggcggctgtcatcctggtcggcgatgtggaccagcta
ccgtctgtaggaccggggcaggtcctagccgacaccatcgagtcggaggcggtgccggtc
gtccgtctgacagaggtcttccgacaggcggcgaccagccaaatcatcacgaacgctcac
cggatcaatgctggccagatgccggtcctgacgccgccgaaggacggcgagaccaccgac
ttctacttcgtcgataccgccgacgccgaagatgcggtcagaaaggtcgtggagatcgtc
cagcaccgcatcccccggcggttcgggttcgacccaatccgcgatatccaaatcctgacc
ccgatgaaccgtggtggtctcggtgcccgcacgctgaacctcgccctccaggcggccctg
aatccggcggtcgatcagcccgccgtcgagcggttcggctggacctaccggcccggcgac
aaggtcatgcaggttgagaacgactatgacaaggaggtctacaacggggacctggggctg
gtgaccgccattgatcctgacgcccagcaggtcgtgatcaactttgacggtcgagacgta
gtatacatttttggggaactcgatgaggtctcgctggcttttgcgaccacgatccacaag
tcgcagggctcggagtacccggcagtcgtcatacccattgggatgccacacttcatgatg
ctcaagcggaacttgatctacactggggtaacgaggggcaagaaactcgtggtcctagtt
ggtcagcggcgggcagtggggctcgctgttcgaactgctgaggacggtcgaaggtggtcg
aagctccgtgaaatcctgaagaagcctgtgccggtcaaaaatcaggccggcacttggctg
acttcttga

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