Azospirillum thiophilum: AL072_03900
Help
Entry
AL072_03900 CDS
T04091
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ati
Azospirillum thiophilum
Pathway
ati03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ati00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AL072_03900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ati03400
]
AL072_03900
Enzymes [BR:
ati01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AL072_03900
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AL072_03900
DNA repair and recombination proteins [BR:
ati03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AL072_03900
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ALG70200
UniProt:
A0AAC8VVK3
LinkDB
All DBs
Position
1:861067..861909
Genome browser
AA seq
280 aa
AA seq
DB search
MPELPEVETVCRGLAPHLEGRRLVHVEQRRPNLRTPFPPRFCERLTGRLVRSVRRRAKYI
LMEMDDGTVLIAHLGMSGRMIIAPERPEAFGKHDHVVFETDAGTIVTFNDARRFGLMDLT
VVDALDDHPMLRSLGPEPLGNEFSGPELARRLAGKATPVKAALLDQSVVAGLGNIYVAEA
LFQAGILPTRSAASLTAAEADRLAVAVREVLERAIAAGGSSLRDYRQASGELGYFQHQFA
VYDREGEGCPGCDCDRARTGGVQRIVQSGRSTFFCAARQR
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcttcccgaggtcgagacggtgtgccggggcctcgccccgcatctcgaaggc
cggcggctggtccatgtggagcagcgccggccgaacctgcgcacccccttcccgccgcgc
ttctgcgagcggctgaccgggcgcctcgtgcgctcggtgcggcgccgcgccaaatacatc
ctgatggagatggacgacggcaccgtgctgatcgcccatctcggcatgtcgggccggatg
atcatcgcgccggaacggcccgaagccttcggcaagcatgatcatgtagtgttcgagacc
gacgccggcaccatcgtcaccttcaacgacgcgcggcgcttcggcctgatggacctgacg
gtggtcgacgcgctggacgaccacccgatgctgcgcagcctggggccggagccgctgggc
aacgaattctccggccccgaactcgcccgccggctggccggcaaggcgacgccggtcaag
gcggcgctgctcgaccagagcgtcgtcgccgggctgggcaacatctatgtggcggaggcg
ctgttccaggccggcatcctgccgacccgcagcgccgccagcctgaccgccgccgaggcc
gaccggctcgccgtcgcggtgcgcgaggtgctggaacgcgccatcgccgccggcggctcc
tcgctgcgcgactaccggcaggcgtcgggggagctgggctatttccagcaccagttcgcc
gtctacgaccgcgagggcgagggctgccccggctgcgactgcgaccgcgcccggaccgga
ggcgttcagcggattgtacagtcgggccgctcgactttcttttgtgcggcgcgccaacgg
tga
DBGET
integrated database retrieval system
