Azospirillum thiophilum: AL072_10430
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Entry
AL072_10430 CDS
T04091
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ati
Azospirillum thiophilum
Pathway
ati03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ati00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL072_10430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ati03400
]
AL072_10430
Enzymes [BR:
ati01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL072_10430
DNA repair and recombination proteins [BR:
ati03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AL072_10430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
SecA_DEAD
AAA_16
UB2H
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ALG71254
UniProt:
A0AAC8VXE8
LinkDB
All DBs
Position
1:complement(2253729..2257370)
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AA seq
1213 aa
AA seq
DB search
MVSFDLQPGRAGRLLIGGAPEGHDARILAELAQKAGGYGLLHVALDDTRAALLAEALAFF
APKLEVMTFPAWDCLPYDRVSPNGGIVAGRIDTLTRLIARRDAAANRDGLAPLIVLTTVN
AVVQKVPPRSAFKDALFTAKLRDRIDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIVDL
FPPGTDEPLRLDLFGDELEGVRAFDPMTQRTTDKRERVELKPMSEVFLDEAGIARFRSGY
RELFGAVTDDDPLYEAISAGRSYGGMEHWLPLFHESMDTVLDYLPRGIVSLDHQAAEARD
ARMAQVVDFHASRLSMMSIEKRAGSPVYKPVPVASMFIDAVGWDALMGERAVAQLQVFST
PPGIKGTVDAGGKRGHDFAEERNRPDINVFDAVKDHIRAQRADGRRVLIAGYSAGSRDRL
SNVLADHGIPGLEPAESMEEVRRFDRGIIGTIVLGMEHGFTSPDLAVITEQDVLGDRLVR
PHKKKRKAANFIAEHSALHEGDIVVHMDHGIGRYDGLETLEVTGAPHDCLRLVYEGGDKL
YVPVENIEVLSRYGSEDANVQLDKLGGAGWQGRKARVKKRLKDMAEALLRIAAERMLKKA
DPVLTPEGVYQEFAARFPYPETDDQLKAIEDIFTDLGSGRPMDRLVCGDVGFGKTEVALR
AAFMVAMSGKQVAVVVPTTLLARQHFKTFSTRFSGLPVRVVQLSRMVTAREQTLVKKELA
EGTADIVVGTHALLAKGLDFKRLGMVIVDEEQHFGVKQKERLKELRADIHVLTLTATPIP
RTLQMALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQSFYVCPRVE
DLAKVAERVRELVPEVKIVTAHGQMAASELEDVMTAFDEGRFEVLLATNIIESGLDIPNA
NTLIVHRADLFGLAQLYQIRGRVGRSKKRGYAYLTYAPNKPLSATAQQRLHVIETLDSLG
AGFQLASHDMDIRGAGNLLGEEQSGQVREVGVELYQQMLEDAVANARASMQEGAVAAAAA
QDWVPQINLGTPVLIPEAYVPDLTVRLSLYRRIADLVDRAEVDGFAAELIDRFGKLPEEV
ENLLDVVTIKRLCKQANLDRVDAGPKGVVLAFHDNVYAEPAKLLTYIAQHLTLMKLRPDH
KLVYSREWPDPQARVRSVQKLVKDLAEMASGGGVPRGETPPPPPPPPPPKPTGAKLVSRL
GNNTRFGRPTGRR
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
ttggtcagtttcgatctccagcccggccgcgccggccgtctcctgatcggcggcgcgccc
gagggtcacgatgcccgcatcctggcggagcttgcgcagaaggccgggggctatggcctg
ctgcatgtggcgctggacgacacccgcgccgccctgctggccgaagcgctggccttcttc
gcgccgaagctggaggtgatgaccttcccggcctgggactgcctgccctatgaccgggta
tcgccgaacggcggcatcgtcgccgggcgcatcgacacgctgacccggctgatcgcccgg
cgcgacgccgcggcgaaccgcgacgggctggccccgctgatcgtgctgaccaccgtgaac
gcggtggtgcagaaggtgccgccgcgcagcgccttcaaggacgcgctgttcacggccaaa
ctgcgcgaccgcatcgacctggagaagctgcagcgctacctcgccggcaacggctacaca
cgcgcccagacggtgcgcgagccgggcgagttcgccgtgcgcggcggcatcgtcgacctg
ttcccgcccggcaccgacgagccgctgcgcctcgacctgttcggcgacgaactggagggg
gtgcgcgccttcgatccgatgacccagcgcaccaccgacaagcgcgagcgggtcgagctc
aagccgatgtcggaggtgttcctggacgaggcggggatcgcccgcttccgttccggctac
cgcgagctgttcggcgcggtgaccgacgacgacccgctctacgaggcgatctccgccggc
cggtcctatggcgggatggagcattggctgccgctgttccacgagagcatggacacggtg
ctggactacctgccgcgcggcatcgtcagcctggaccatcaggcggcggaggcgcgcgac
gcccgcatggcgcaggtggtcgatttccatgcctcgcgcctgtcgatgatgtcgatcgag
aagcgggcgggatcgccggtctacaagccggtgccggtcgcctcgatgttcatcgacgcc
gtcggctgggacgcgctgatgggcgaacgcgcggtggcgcagttgcaggtgttctcgacg
ccccccggcatcaagggcacggtcgatgccggcggcaagcgtggccacgatttcgccgag
gagcgcaaccgccccgacatcaacgtcttcgacgcggtgaaggaccatatccgggcccag
cgcgccgacggccggcgggtgctgatcgccggatattccgccgggtcgcgcgaccgcctg
tccaacgtgctggccgaccacggcatccccggcctggagccggcggagagcatggaggag
gtccgccgcttcgaccgcggcatcatcggcaccatcgtgctggggatggagcacggcttc
acctcgcccgacctcgcggtcatcaccgagcaggacgtcctgggcgaccgtctggtccgg
ccgcacaagaagaagcgcaaggccgccaacttcatcgccgagcattcggcgctgcacgag
ggcgacatcgtcgtccatatggaccacggcatcggccgctatgacgggctggagacgctg
gaggtcaccggcgccccgcacgactgcctgcgcctggtctatgagggcggcgacaagctc
tatgtcccggtcgagaacatcgaggtgctgtcgcgctacggctcggaggatgccaacgtc
cagctcgacaaactgggcggcgccggctggcagggccgcaaggcgcgggtcaagaagcgg
ctgaaggacatggcggaagccctgctgcggatcgccgccgagcgcatgctgaagaaggcc
gatccggtgctgacgccggagggcgtctaccaggagttcgccgcccgcttcccctacccc
gagaccgacgaccagctgaaggcgatcgaggacatcttcaccgacctcggcagcggccgg
ccgatggaccgtctggtctgcggcgacgtcggcttcggcaagaccgaggtggcgctgcgc
gccgccttcatggtggcgatgagcggcaagcaggtcgccgtcgtcgtgcccaccaccctg
ctggcccgccagcatttcaagaccttctcgacccgcttcagcggcctgccggtgcgcgtc
gtccagctgtcgcgcatggtcaccgcccgcgagcagaccctggtcaagaaggagctggcg
gagggcaccgccgacatcgtcgtcggcacccacgccctgctggccaaggggctggacttc
aagcggctcggcatggtcatcgtcgacgaggagcagcatttcggcgtcaagcagaaggaa
cggctgaaggagttgcgcgccgacatccatgtgctgacgctgaccgccacgccgatccca
cgcaccctgcagatggcgctttccggcgtgcgcgagctgtcgctgatcgcgacgccgccg
gtcgaccgtctggcggtgcgcaccttcgtcctgccctacgacccggtggtgatccgcgag
gcgatcctgcgcgagcattaccgcggcggccagtccttctacgtctgcccgcgggtggag
gatctggcgaaggtcgccgagcgggtgcgcgagctggtgccggaggtcaagatcgtcacc
gcccacggccagatggcggccagcgagctggaagacgtgatgaccgccttcgacgagggc
aggttcgaggtgctgctggccaccaacatcatcgagagcggcctggacatcccgaatgcc
aacacgctgatcgtccaccgcgccgacctgttcgggctggcccagctctaccagatccgc
ggccgcgtcggccggtcgaagaagcgcggctacgcctatctgacctatgcgccgaacaag
ccactgagcgccaccgcccagcagcgcctgcacgtcatcgagacgctggacagcctgggc
gccggcttccagctcgccagccacgacatggacatccgcggcgccggcaatctgctgggc
gaggagcagtcgggacaggtgcgcgaggtcggcgtcgagctgtaccagcagatgctggag
gacgccgtcgccaacgcccgcgcctcgatgcaggagggcgccgtcgccgcggccgccgcg
caggactgggtgccgcagatcaatctcggcacgccggtgctgatccccgaggcctatgtg
cccgacctgacggtgcggctgtcgctctaccgccgcatcgccgatctggtcgaccgcgcg
gaggtcgacggcttcgccgccgagctgatcgaccgcttcggcaagctgccggaggaggtc
gagaacctgctggacgtcgtcaccatcaagcggctgtgcaaacaggccaacctcgaccgg
gtcgatgccgggccgaagggcgtggtgctggccttccacgacaatgtctatgccgagccg
gccaagctgctgacctacatcgcccagcacctgacgctgatgaagctgcggcccgaccac
aagctggtctacagccgcgaatggcccgatccgcaggcccgcgtccgcagcgtgcagaag
ctggtgaaggatctggcggagatggcgtccggcggcggcgtgccgcgcggcgagactccg
ccgccgccccctcccccgccaccgcccaagccgaccggcgccaagctggtgtcgcgcctg
ggcaacaacacgcgcttcggccgtccgaccggacgccggtga
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