Actinotignum timonense: CYJ17_0004050
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Entry
CYJ17_0004050 CDS
T09485
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
atim
Actinotignum timonense
Pathway
atim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYJ17_0004050 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atim03021
]
CYJ17_0004050 (rho)
03019 Messenger RNA biogenesis [BR:
atim03019
]
CYJ17_0004050 (rho)
Transcription machinery [BR:
atim03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CYJ17_0004050 (rho)
Messenger RNA biogenesis [BR:
atim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CYJ17_0004050 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
HeH
Rho_N
SAP
Spore_III_AA
NACHT
ResIII
Motif
Other DBs
NCBI-ProteinID:
WOT00805
LinkDB
All DBs
Position
979969..981999
Genome browser
AA seq
676 aa
AA seq
DB search
MTETPTSGAISTMRVPQLRALAEELGLDIDPKAKKADLLAAIREVRPARRGRPRKEDSLA
NITKAPEKSAAATTAKTAAKKESAKAAESAPAAAEAPAEAPAPARKTRTARSAAASAPSA
ESAPVAAPATSATSTAPREEREDREERKVRRRVRRDHREPVHIDLPEPKQEAGQAARRSD
SLSDENTLAALDAIGDAAERRAGDHHDTASERRRRKRNRRGEEHEEARRSRRTSDRTERT
DRGEGAERADHEAETAAPAVKVEREERQDIPAGKRQAEDTLVPVAGIVDTQGNQMVLRTG
GYLPGPNDAQISTALVRQYGLRRGDAVVGAIRQHDEDNSSHNNRNNKRNPRRRYNNQNNN
RSGNQLVQVDTINSLPAAEAARRPDFNKLTPVYPDEILRLETERKGLSTRAIDLVAPIGK
GQRGLIVSPPKAGKTMIMQQIAKAIAANDPEVHIMVVLVDERPEEVTDMRRIVKGEVIAS
TFDRPASDHTIVSELAIERAKRLVELGQDVVVLLDSLTRLSRAYNLAAPASGRILSGGVD
AAALYPPKKFFGAARNIENGGSLTIIASALVETGSKMDEVIFEEFKGTGNMELRLSRQLA
DRRIFPAIDINASGTRREEMLYKPEELKVIWQLRRALGTLGVDEAADFVLKRMRNTENNA
EFLVSIMRSMQGSRGE
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
gtgacggaaaccccaacatcaggcgcaatctcaacgatgcgggtgccgcagctgcgcgcg
ctcgccgaagaactcggcctggacattgacccgaaagctaagaaggcggacctgctcgcg
gccattcgcgaagttcgccccgcgcggcgcgggcggccccgcaaggaagatagcctcgcc
aatattacgaaggcacccgaaaagtccgctgctgccaccacggcaaagaccgcagcgaag
aaggaaagcgcgaaagccgcagaatcggccccggccgccgcggaagctccggctgaggca
ccggctccggcccggaaaacgcgcacggcccgctctgcagcggcctcggcacccagcgcg
gaaagcgctccggtagcagcccccgccacctcggctacttccaccgcaccccgggaagaa
cgagaagatcgcgaggaacgcaaggtgcggcgccgggtgcgccgggatcaccgcgaaccg
gtccatatcgatctgcccgaaccgaagcaggaagccggccaggccgcgcgccgctccgat
tccctcagcgatgaaaatactctcgcggccctggatgccatcggcgatgccgcggaacgc
cgcgccggtgaccatcatgacaccgcctcggagcgccgccgccgcaagcgcaaccgccgc
ggtgaggaacacgaagaagcccgccgctcgcggcgcacctcggatcgtaccgagcgcacg
gatcggggcgaaggcgcggagcgcgccgatcacgaggcggaaaccgccgccccggccgtg
aaggttgagcgtgaagaacgccaggatatcccggccggcaagcgccaggcggaagatacc
ctcgttcccgttgccggcattgtggatacccagggtaaccagatggtgctgcgcaccggc
ggctacctgcccggccccaatgatgcgcagatttccaccgcgctggtgcgccagtacggt
ctgcgccgcggggatgccgtggtgggtgctattcgccagcacgatgaggataattcctcg
cataataaccgcaataacaagcgtaatccgcgccgtcgttacaataatcaaaacaataac
cggtccggtaaccagctcgtccaggtggatactattaactccctgcccgcagctgaagca
gcgcgccgcccggactttaataagctcaccccggtctacccggatgagattttgcgcctg
gaaaccgaacgtaagggcctgtctactcgcgccatcgatttggttgcccccattggcaag
ggccagcgcggcctcattgtttccccgccgaaggccgggaaaaccatgattatgcagcag
atcgccaaggcgattgccgcgaatgatcccgaggttcatatcatggtggtcctcgtggat
gaacgccccgaagaagtgacggatatgcgtcgcatcgtcaagggcgaagtgattgcttcc
acctttgaccgcccggcttcggatcacactatcgtctccgaactggctattgagcgcgcc
aagcgcctggtggaactcggtcaggatgtggtggttcttctcgattccctcacccgcctt
tcgcgtgcctacaacctcgcggcaccggcttcggggcgtatcctttccggtggtgtggat
gccgcggcgctctacccgcccaagaagttcttcggtgcggcgcgcaatatcgaaaatggt
ggctcgctcacgattatcgcttccgcgctggtggaaaccggctcgaagatggacgaagtt
attttcgaagaattcaagggcaccggcaatatggagctgcgcctttcgcgccagctcgcg
gatcggcgtatcttcccggcgatcgatatcaacgcctcgggtacccgccgcgaagaaatg
ctctacaagcccgaagaactcaaggtcatctggcagctgcgccgggccctgggaactctc
ggagtggatgaagcggcggacttcgtgctcaagcggatgcggaataccgaaaataacgcg
gaattcctcgtgtcgattatgcgttccatgcaaggatcgcgcggcgaataa
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