Actinotignum timonense: CYJ17_0005675
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Entry
CYJ17_0005675 CDS
T09485
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
atim
Actinotignum timonense
Pathway
atim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYJ17_0005675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atim03019
]
CYJ17_0005675
Messenger RNA biogenesis [BR:
atim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CYJ17_0005675
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_3
Lactamase_B_6
ODP
DUF459
Motif
Other DBs
NCBI-ProteinID:
WOS99325
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Position
1382511..1384187
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AA seq
558 aa
AA seq
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MSDEVKKSVPPLRDAVRIVPLGGLGEVGRNCNVLEYQGKLVVADCGVLFPEEAQPGVDLI
LPNLDYLEDRLEDIAAIVLTHGHEDHIGAVPYLLKMRPDIPVIGSQLTIAFVEAKLQEHH
ITPNVTVVAEGDSMSIAGMEFEFIAVNHSIPDALALFIRTPEGNILITGDFKMDQLPLDG
RLTDLRAFAAAGDEGVDLFMCDSTNAEIPGFVHSESEIQPVIDSVIGGATGQIVVASFAS
HVHRVQQVLNAAAHNGRKVAFVGRSMVRNMKIAEDLGYLDVPEGTVVDLKNMKDLPENRR
IYMSTGSQGEPMAVLSRIANRSHPKVAINPGDTVLLASSLIPGNENSVFRVINGLIKLGA
NVIHQGNARVHVSGHAAQGELLYCYNILQPAYAMPIHGEVRHQVANAGVAVKTGVPADNV
ILAENGSVIDMIDGEVRLVGSVPFQNIYVDGSSVGDITESELKDRQILSNEGFIAIFAVV
DTNARRIVTGPHLQARAMAEDETVFDSITPEVTRALEEAVAKGSDSYGMQQAMRRVVGRW
VSRKLRRSPMIIPTVVEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgatgaagtgaagaaatctgtaccaccgctgcgggacgccgttcgtatcgttccc
ctaggtgggctcggtgaagttggccgcaattgcaatgttcttgaataccagggaaaactg
gtggttgccgattgtggcgtgctgttccccgaagaagcccaacccggtgttgatcttatt
ctccccaatcttgactacctggaagatcgcctcgaggatattgccgccatcgtgctcacc
cacgggcatgaagaccatatcggggcggtgccctacctgctgaaaatgcgcccggatatc
ccggtgatcggctcccaattgaccattgctttcgtggaggcgaaactccaggagcaccac
atcaccccgaatgtcaccgtggtggccgaaggggattccatgagtatcgcgggcatggaa
tttgagttcattgccgtcaaccattccattccggatgcgctggccctgttcatccgcacc
ccggagggcaatattctcatcaccggtgatttcaagatggaccagctcccgctggacggg
cgcctcaccgacctgcgtgcattcgcagcggccggggatgaaggcgtggacttgttcatg
tgcgattccaccaacgcggaaatccccggttttgtgcattccgagtcggaaattcagccg
gtgatcgattcggtgatcggcggggccaccgggcagatcgtcgtcgcctccttcgcctcg
cacgtgcaccgggtccagcaggtcctcaacgccgcggcccacaatgggcgcaaggttgcc
ttcgtgggccgatccatggtgcgcaatatgaaaattgcggaggacctggggtatttggac
gtgccagagggcaccgtcgtcgatctcaaaaatatgaaggacctgcccgaaaaccgccgc
atctacatgtccaccggctcccagggcgaacccatggcggtgctttcccgcatcgcgaat
cgttcccaccccaaggtggcgattaatcccggggatacggtgctgctggcttcctcgctt
attcccggaaacgaaaattcggtgttccgggtgatcaacgggcttatcaagctcggcgcg
aatgttatccaccagggaaatgcgcgggtgcacgtatcggggcacgccgcccagggcgaa
ttgctctactgctacaacattttgcagccggcctacgccatgcccattcacggggaggtg
cgccaccaggtcgctaatgccggtgtcgcggtgaaaaccggggtgcctgccgataatgtg
attctggcggaaaacggttcggttatcgatatgatcgacggcgaagttcgccttgtcggc
tcggtgcctttccagaatatttacgtggacggctcgtcggtcggggatattaccgaatcc
gaactcaaggaccgccagatcctctccaacgaaggctttattgctattttcgcggtggtg
gataccaatgcgcggcgcatcgttaccggcccgcacctccaggcgcgcgccatggccgaa
gatgaaaccgtctttgacagcatcactccggaagtcacgcgtgccctggaagaagccgtg
gcgaagggctcggatagctacgggatgcagcaggccatgcggcgcgtggtggggcgctgg
gtctcgcgtaaattgcgccgttcgcccatgattattccgaccgtcgtggaggtgtag
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