Actinotignum timonense: CYJ17_0006265
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Entry
CYJ17_0006265 CDS
T09485
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
atim
Actinotignum timonense
Pathway
atim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYJ17_0006265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atim03019
]
CYJ17_0006265
03009 Ribosome biogenesis [BR:
atim03009
]
CYJ17_0006265
Enzymes [BR:
atim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CYJ17_0006265
Messenger RNA biogenesis [BR:
atim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CYJ17_0006265
Ribosome biogenesis [BR:
atim03009
]
Prokaryotic type
rRNA processing factors
CYJ17_0006265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
DUF7326
Motif
Other DBs
NCBI-ProteinID:
WOS99437
LinkDB
All DBs
Position
1514511..1516946
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AA seq
811 aa
AA seq
DB search
MAKEATASEHGTVSAAAASPFFIPAPEEEVVDIPRFRINTDIPLFQEPDAANAIRVTYLV
DDDSSSGADSDSGDNSSSRRTRRRERGEHDSSARTPRSAEHDDAASEEGEHEETDDTSVA
PTRRRRRSLSSDDEVAAPRGSTRLAAKRARRRENREGSARRRGSITEVEYLARRESVKRD
MIVRERDGLNQIAVLEDDVLVEHYVARHTQISMVGNVYLGRVQNVLPSMEAAFVDIGKGR
NAVLYAGEVDWKAAGVTGKNRRIEQALKSGDTVLVQVTKDPIGHKGARLTSQVTLAGRHL
VLVPGGDMTGISRKLPDSERSRLKKLLKEIVPEDHGVIVRTAAEGASAEQLQNDVDRLTK
SWKEIQRKAKAAKTAPQVLKSEPELAVRVVRDIFNEDFDSLRVQGEDAWETISTYVEELS
PELMDRVSRWDDSRDIFEAYRVEEQLAKAFDRKVWLPSGGTLVIDRTEAMTVVDVNTGKF
TGSGGSLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLIECLG
RDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSTVCEACEGRGYIIHDHPVEENEEPHAP
RKRKARREASAPQREAAVQMMNSIAAAGHADAQQKDSQEKADNQEKTDKPAESRKSAKRE
KSEKSEKSEKSEKPDKQDKSEKQPATRRRRSSRSAAATADTSSVTTKDAAVTGGARTASG
TATNGTGTASTGTARKTGMVISSGVVSPTHAAASTSAHAKTVSPSSSIHTGSSEAANGTR
GGTKRRAVVSSGPISTGNGAGVLSFPASSQG
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagaagccaccgcgtcggagcacggcaccgtgagtgcggctgcggcgagcccg
ttttttattccggcaccagaagaagaggtggtggacatcccgcgcttccgtattaatacg
gatattccactcttccaggaacccgacgctgccaacgccatccgggtcacctacctcgtt
gatgacgattcttccagcggcgcagattccgattctggcgataattcttcctcccggcgc
acccgccggcgcgaacgtggcgagcatgattcttctgcccgcacgcctcgaagtgcggag
cacgacgacgccgcctctgaagaaggcgagcacgaagaaacggatgatacttcggtagcg
cccacccgcaggcgtcgtcgtagcctttcttccgatgatgaagtggcggcgccccggggc
tccactcgcctggccgccaagcgggcccggcgccgcgaaaaccgcgagggttcggcgcgc
cggcgcggttccattacagaagtggaatacctggcgcggcgcgaatcggtcaagcgtgac
atgatcgtgcgcgaacgcgatggtctcaaccaaatcgcggtgctcgaagatgatgtgctc
gtcgagcattacgtggcgcggcatacccagatttccatggttggcaatgtgtacctgggg
cgggtgcaaaatgtgctgccctcgatggaagccgctttcgtggatatcggtaagggtcgt
aacgcggtcctttacgccggggaagtggattggaaagccgccggggttacgggtaaaaac
cggcgcattgagcaggccctgaaatccggggataccgtgctggtgcaggtcaccaaggat
cctattggccataagggcgcgcgcctgaccagccaggttaccctggctgggcggcatctt
gttcttgttcccggtggggatatgaccggtatttcgcgtaagcttcccgattcggaacgc
tcgcggctcaagaagcttcttaaagaaattgtgccggaagatcacggcgttattgtgcgt
accgccgccgaaggtgcgagcgctgaacagctccagaatgacgtggatcgcctgacgaag
agctggaaggaaattcagcgcaaggccaaggcggcgaaaaccgccccgcaggtactcaag
agcgaaccggaactggccgtgcgggtggtacgcgatatcttcaacgaagattttgattcc
ctgcgcgtgcagggtgaggatgcctgggaaacgatttccacctacgtggaagagctgtcc
cccgaactcatggaccgggtgagccgctgggatgattcccgcgatattttcgaggcctac
cgggtggaagagcagctcgccaaggcttttgatcgcaaggtgtggctgccctcgggcgga
accctcgttattgaccgcaccgaagccatgacggtggtggacgtgaacaccgggaaattc
accggatcgggtggctcgctagaagaaacggttacccgcaataatctggaagcggccgaa
gaaatcgtgcggcaattgcggctgcgcgatatcggcgggattgtggttattgactttatt
gatatggttctggaatccaaccgtgacctggtgctgcgccggctcatcgagtgtctcggg
cgtgatcgcacccgccaccaggtagcggaagtaacctccctgggcctggtgcagatgacc
cgcaagcgcgtggggcagggcctcgtggaggctttctctactgtttgtgaggcctgtgaa
gggcgcggctatattattcatgatcacccggtggaggaaaacgaagaacctcacgcaccc
cgcaagcgcaaggcgcggcgggaagcctcggcgccgcagcgcgaggcggctgtgcagatg
atgaattccatcgccgctgccgggcatgctgatgcgcagcagaaagatagccaggagaag
gcggacaaccaggagaaaaccgacaagcccgccgaatcacggaaatccgcgaagcgggag
aagtcggaaaagtcggagaaatctgaaaagtcggagaagccagataaacaggataagtcc
gagaagcagccggctacgcggcgtcgtcgtagctcgcgcagcgcggcagccaccgcggat
acctcgagcgttaccaccaaggatgcggctgtcacgggcggcgcacgcactgcatctggt
accgcaactaacggaaccggcaccgcaagcacgggcaccgcgcggaagaccggcatggtt
atctcctccggtgtggtgagccccacgcacgcggccgcttcgactagcgcccacgcaaag
acggtgtcgccgtcgtcctctatccacaccggatcgagtgaagcggctaacggtacgcgc
gggggtaccaagcggcgcgccgtggtttcttccggacccatctccaccggcaacggggcg
ggggttctgagtttcccggcgagttcccaagggtaa
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