Actinotignum timonense: CYJ17_0008055
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Entry
CYJ17_0008055 CDS
T09485
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
atim
Actinotignum timonense
Pathway
atim03420
Nucleotide excision repair
atim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYJ17_0008055
03430 Mismatch repair
CYJ17_0008055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atim03400
]
CYJ17_0008055
Enzymes [BR:
atim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYJ17_0008055
DNA repair and recombination proteins [BR:
atim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CYJ17_0008055
MMR (mismatch excision repair)
Other MMR factors
CYJ17_0008055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WOS99761
LinkDB
All DBs
Position
complement(1920144..1924052)
Genome browser
AA seq
1302 aa
AA seq
DB search
MTPTPHEYVEAQTPAEPDAALDRILAGQEHPPTAEQRRVITSTAPAILVVAGAGSGKTKT
MVDRIAYHLACGNVSPDEVLGLTFTRKAAGELAERVNTSLEKLGLLAPEGSNAGSAMRRP
VISTYNSFANDIAGAYGMLVGADPTARLITDAERVQLMDQVVSALPSSASTAVLAERSRS
SLINDALTFAQGILTNGVELAEARAFLTAQDHALETLCADSTRIMSARCWYPDASKKFTN
LKGGAAVPKQQQVVLGLVESYLQLKKELNVTEFADQVAIAGRIMTRYPQIAKEISSRYRL
ILLDEYQDTDENQAQFLLGALTAKRDGFLSITAVGDPNQAIYGWRGASAAALTNFARHTT
RIFGHVEKLQLSTAFRNDRAVLAAGNAVATPLERDTFLREDRDHPNFPPEFRPAPTSAGT
AGSAGESTDIAPLRLRERPGAGAGRVSEIRTLLREDSYRSIARHILAVRERVAAENEERR
ARGEAPRGAEIAVLCRKRSYIDMMAAALRELNSQLARESAAHPGGATPQPLAFEIVGGES
LVARPEIITLRAALGLAANPARGDLLARLLAHWNIGVADIRALSRWARRYAAAAVTKVDS
DVRASFINDDAAPGHEGASGAAGELATAQPLLNSRDEANLGEALHALMLLVSTPSTPGMY
EDGDGHLDAHADGNSGEHGGECPGERADAAELAGTGEAELRQAARSARGEFSSIGWERLR
RLNATLASLRSGLHNALADQIDRAVHLLGLDTAAATRSEGGQRVRTSIDQFISLARTYAH
GDSQRGMREFVEWLDVVETEEHGGEEESGADIPRVESAVDVTPGVIQLMTVHAAKGLEWR
DLVVVPELVKGQFSEVTEGVKAWPRNTGIFPYPLRTDYPYLPQFTLAGARNLDKITVANT
YARFLDELAYHESEEMRRLAYVAFTRSTRELLLAGYCFQDDKDVSGRVQKAEKQAKKNAA
ETPEDGGDNALGVETRPPSCFLSAVREAAARGELTLAASPATVSSVKLPEGFPDIAPDSL
SVDELVDIFGEKVVYPPVLEPVPHYFEAPDLLAWPRDLARSLPIEAETLDADQRAELTQV
IGRLIARKQQAETSEYTEAGGHYTATELVYRAEHREEYLLNKRRPVPRQPSRAARLGTIL
HEKIADSYASAAVLNIDSEDPLDHDPVLSAEEIARMYENYEASEWASYPPLAIEQQLGVV
IGGHVVHCALDAVFDTSQVPGRAPVTIVDWKSGRRPYGETKAARELQLALYRLAWSRAHS
IPLAEIDASFVYLRGNRAEELRAGKLSEEEILLRAGLPNQEQ
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgacacccacaccccacgaatacgttgaagcacagacgccagcggaacccgatgccgct
ctagaccgcatcctcgccggccaagaacacccacccaccgcggaacaacgccgggtcatc
acctccaccgccccggccatactcgtggttgccggagccggatcgggcaaaacaaaaacc
atggtggaccggatcgcttaccacctcgcctgcggcaacgtgagcccggatgaagtcctt
ggactcaccttcacccggaaagccgccggagaactagctgaacgagttaacaccagctta
gaaaaactcggcctcctcgccccggaaggaagcaacgcggggagcgccatgcgccggccc
gtcatatccacctacaactctttcgcgaacgacatcgccggagcctacggcatgctggtc
ggagccgatcccaccgcccgcctcatcaccgatgccgaacgcgtccagctcatggaccag
gtcgtcagcgccctgcccagcagcgctagcaccgcggtcctggccgaacgcagccgctcc
agcctcatcaacgacgccctcaccttcgctcaaggaatcctcaccaacggcgtggagcta
gcagaagcccgcgctttcctcaccgcccaagatcacgccctggaaactctgtgtgccgac
tcaacacgcatcatgagcgcgcgctgctggtacccggatgcctccaagaaattcaccaat
ttgaaagggggagcggcagtacccaaacaacaacaggtcgtacttgggctagtggagtcc
tacctgcagctcaaaaaagaactcaacgtcaccgaattcgccgaccaagtcgctatcgcc
gggcgcatcatgacccgctatccccaaatcgccaaggaaatttcctcccggtatcgcctc
atcctgctcgacgaataccaagacaccgacgaaaaccaagcacaattcctcctgggcgcc
ctcaccgcgaaacgagacggcttcctatccatcaccgcggtaggcgatccgaaccaggcc
atctacgggtggcgaggcgccagcgccgccgccctgaccaacttcgcacgtcacaccacc
cgcattttcgggcacgtagagaaactccagctctccaccgctttccgtaatgatcgagcc
gtgctcgccgcaggcaacgccgtcgccactcccttagaacgcgacacgttcctacgcgaa
gatcgtgaccacccgaatttcccacccgaattcaggcccgccccaacaagcgcgggaacc
gcggggagcgcgggggaaagtaccgatatcgcgccactgcggctgcgtgaacgccccgga
gcgggagccgggcgcgtcagcgaaatccgtaccctccttcgcgaagactcctaccggagt
atcgcccggcatatcctcgcggtacgcgagcgggtggccgcggaaaacgaagagcggcgc
gctcgcggtgaagcaccgcgcggggccgagatcgccgtcctgtgccgcaaacgctcctat
atcgatatgatggccgccgcactgcgcgaactcaacagccagctcgccagggaatctgcc
gctcaccctggcggtgccacgcctcagcccctcgcctttgagatcgtgggcggggaatcg
ctggtggcgcgcccggaaatcattaccctgcgggccgccctcggcctggccgccaacccg
gcccgcggcgacctcctcgcgcgcttactcgcccactggaatattggggtggcggatatc
cgcgcgctctcacgctgggcgcgtcgctacgcggccgcggctgtcaccaaagtcgatagc
gacgtgcgtgccagttttattaacgacgacgccgcacccggccacgagggcgcgtctggc
gccgcgggtgaattggctaccgcgcaaccccttctcaacagtcgtgacgaagccaatctg
ggcgaggcgctccacgcgcttatgctcctggtgagcaccccaagcacccctggcatgtat
gaggatggggatggacatctcgatgcgcatgcggatggcaactcgggtgaacacgggggc
gagtgcccaggtgagcgcgcggatgcggcggagctggcgggaacgggcgaagctgagctc
aggcaagcagcccgatccgcacgcggcgaattctccagcattggctgggaacgcctgcgg
cgcttgaatgccaccctcgcgtccttgcgttccggtttgcataacgctttggccgatcag
attgatcgggccgttcacctgctcggcctggataccgcggctgctacccgcagtgaaggc
gggcagcgagtccgtacctccatcgaccaattcatctccctggcccgcacctatgcgcac
ggtgatagccagcggggcatgcgcgaattcgtggaatggctcgatgtggtggaaacagaa
gaacacggcggggaagaagaatccggggcagatattccgcgggtagagagcgcggtcgat
gttacccccggggttatccaattgatgaccgttcatgctgccaaaggtttggaatggcgt
gacctcgtcgtcgtacctgaactcgtgaaaggccagttctccgaagtgaccgaaggagtg
aaagcctggccgcgcaataccggtattttcccgtaccccctgcggaccgactatccgtac
ctaccccaattcacactggccggagcgcgcaatctcgataaaatcaccgtcgcgaatact
tacgcgcggttccttgacgaattggcgtaccacgaaagtgaagaaatgcggcgcctcgcc
tacgtggcctttacccgatccactcgggagctcctgctagccggatactgtttccaagat
gataaagatgtgtccggccgggtacagaaagcagaaaagcaagcaaagaaaaacgccgcc
gaaaccccggaagatgggggcgataacgcgctgggcgttgaaacacggccgccctcctgc
ttcctgagcgcggtgcgagaagctgccgcccgcggggagctcacgctggctgcctcgccc
gccacggtttcctccgtgaagctgccggaaggattcccggatattgcaccggacagcttg
agcgtggatgagctcgtcgacattttcggcgaaaaagttgtgtacccgccggtcctcgaa
ccggtaccgcattatttcgaggcgcccgatctgcttgcctggccgcgtgacctggcccgc
agcctccctatcgaggcggaaactctcgatgctgaccagcgcgccgaactcacccaggtc
atcggccggcttattgcacgcaaacagcaagccgaaacgtccgagtacaccgaggccggc
gggcattacaccgccaccgagctcgtctaccgggctgaacaccgcgaagaatacctgctc
aataaacgccgcccggttccccgccagccctcgcgagctgcgcgtttgggaacgatcctg
cacgaaaaaatcgctgatagttacgcgagcgccgccgtgctcaatattgatagcgaggat
ccgctcgatcatgatcccgttctcagcgcagaagaaattgcgcgtatgtatgagaattac
gaagcgtccgaatgggctagctacccgccgctcgccatcgagcagcaactcggcgtggtc
atcggggggcatgttgtccactgcgcactcgacgctgttttcgacacctcacaggtaccc
gggcgtgccccggtgactatcgtggactggaaatccgggcggcgcccctacggggaaacg
aaggctgcccgggaactccagctcgccctctaccggcttgcctggtcccgggcccacagc
atccccctcgcggaaattgatgcgtccttcgtctacctgcggggaaatagggctgaagaa
ctacgggctgggaagctcagcgaggaggaaattctgcttcgtgcgggtctgcccaatcag
gagcagtaa
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