Aerococcus tenax: DBT50_0000770
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Entry
DBT50_0000770 CDS
T09458
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
atj
Aerococcus tenax
Pathway
atj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DBT50_0000770 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atj03400
]
DBT50_0000770 (mfd)
Enzymes [BR:
atj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DBT50_0000770 (mfd)
DNA repair and recombination proteins [BR:
atj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DBT50_0000770 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
IstB_IS21
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WOZ52867
LinkDB
All DBs
Position
complement(1625036..1628581)
Genome browser
AA seq
1181 aa
AA seq
DB search
MNLENYLNEKIIDSKLENTLRTGQSVLYLGLQAASKAYMIAEIQASHPDKKTVVLTNNLL
QAERFYEDLQTFNPEADLHLYSSPESVAEDLAIQSPEALGDRLATLDWLLDEDSSGILIS
PIFGLKRALTPVSEWKHLVKNIQRGQDLAVDQLKADLLLLGYERVEAVLRPGEMSVRGDI
VDLFPLTSSQPLRLSLAFDEVERITTFDVNSQKSQEDLEAVTILPAKDLLFSPDRLKAGV
AHLEKVAQEKAEKIQDEAIKKQVQAIFQDEIQAWSAGETTERTHYFSQILYPDSCSLLDY
VGQGQNLVLDDMTRLIELSQEIDQRAALYLQGKVEAGHLPPIDQIYLDSHDQVMAYSGRK
FYLAQWQKGYGNMRFDGLYQFQTRTVTPFYHNKEAIKLEFEAWLRMGRSLLIFIEEEEKA
RDLEKDLKAMNFQAVLTQADQIIPEAINIIAGHLSGGIEFVDSQVVLLAQSDLFDQAKRR
RRKNTNNLSNAERLKNYQELKPGDYVVHVNHGIGQFVGVETIEVAGNHKDYLSIVYADNA
SIHVPIDQIDLVQKYVSAEGKSPKLNKMGGTEWQKTKQRVSKKIEDIADDLVDLYAERET
RKGYAFSPDNEDQAAFEDEFPYPETDDQLRSIQEIKADMEKEKPMDRLLVGDVGFGKTEV
AMRAAFKAMLDGKQVAFLVPTTVLAQQHYETMLERFKDYPFTIDLLSRFRSPAEQKHVIK
GLKEGSVQLVIGTHRLLSKDIKFLDLGLLVVDEEQRFGVKAKERLKALRKNVDVLTLTAT
PIPRTLNMSMMGVRDLSVIETPPANRFPVQTYVMEQNYGAIRDAIERELARNGQVFYLFN
NVQNIQEKANFIEELVPQARVAIAHGQMHANQLEEVLMDFLAGDDDVLVTTTIIETGIDM
PNVNTLLVEDADRMGLSTLYQLRGRVGRSNRVAYAYFMYRPDKALNEASEKRLTALEDFT
ELGAGFKIAMRDLSIRGAGNLLGQEQHGFVNSVGYDLFQQMLDEAIRKKQGKAAKRPQSP
TEIELHIDAYIPSEYIQDENQKVEIYKRINLLEDVDAMWDLDDELLDRFGEPPVEVQWLL
AVGAMKSYATAIGVEKITRKGKAIEQVFTKQQDPSQLTPLIFQALEDIPMKLQIKMANDQ
LVMQLNTKDLSTDQWLDYLLQFLTQLSKDLKADSDQVEGED
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaacttagaaaattatctcaatgagaaaattattgacagtaagctagaaaacaccttg
aggacggggcagagtgttctctacctgggtttacaggcggctagtaaagcctatatgatt
gctgaaattcaagccagccatcccgataaaaagaccgtggtcttgaccaataatctcttg
caggcggagcgtttttatgaagacctgcaaactttcaatccagaagctgacctccacctc
tattccagtccagaaagtgtggctgaagacttagccattcaaagcccggaagctctgggg
gaccgcttggcgaccttagactggttacttgatgaagatagtagcgggatcttaattagt
cctatcttcgggttaaagcgtgccctgactcctgtatctgagtggaaacacctagttaaa
aacatccaacggggccaagatctggcagtcgaccagctgaaagcagacttattgcttttg
gggtatgaacgggtggaggccgttttacgacctggtgaaatgagtgtccggggggatatt
gttgacctcttccccctaaccagttcccagcccttgcgactgtctttagccttcgatgaa
gtggaacgtatcacgacttttgacgttaacagccaaaagagccaagaggacttagaagca
gttaccatcttaccggctaaggacctcttgtttagccctgaccgcctaaaagctggcgtg
gctcatttagaaaaagtggcccaggaaaaagctgagaaaatccaagatgaagccatcaaa
aaacaagtccaggccatcttccaagatgaaattcaagcctggtcagctggggagacgacc
gaacgaacccattattttagtcagatcctctatccagactcttgcagcctgcttgactat
gtggggcagggacagaacctagtgctagatgatatgacccggctgattgaattatcccag
gaaattgaccagcgagccgccctttatctgcaagggaaggtggaagctgggcacctgcct
ccgattgaccagatctatttagatagtcacgaccaagtgatggcttattcggggcggaag
ttctacctggcccagtggcagaagggttacggcaatatgcgctttgatggcctctaccaa
tttcaaacgcggacggttacgcctttttaccataataaggaagccattaaactggaattt
gaagcctggttgagaatgggccggtctttactgatctttatcgaggaggaagagaaggcc
cgcgacttagaaaaagatctcaaggccatgaacttccaggcggtcttgacccaggcagat
caaattattcctgaggctattaatattattgctggccacttgtcgggaggaattgaattt
gttgacagtcaagtggtccttttagcccaaagtgacctctttgaccaggccaagcgtcgt
cgtcgtaaaaataccaataacctctctaacgctgagcgcttaaagaactaccaagagtta
aaacccggcgactatgtggtccatgttaaccacgggattgggcagttcgttggggtagag
accatcgaggtggcgggtaaccacaaggactatctcagcatcgtctatgctgataatgcc
tctatccacgtccccattgaccaaattgacttggtccaaaaatatgtttcagcggaaggc
aagagccctaaactcaacaaaatgggcggaaccgaatggcaaaagaccaagcaaagggtc
agcaagaaaattgaagatattgctgatgacttggtggacttgtatgcagaaagagagacc
agaaagggctatgcctttagtcctgacaacgaagaccaggctgcctttgaagacgaattt
ccttatcctgaaaccgatgaccagctccgctcaatccaggaaattaaagctgatatggaa
aaagaaaagcccatggaccgtctcctcgttggggacgtgggctttggaaagactgaagtt
gccatgcgggctgcctttaaggctatgctagacggtaagcaagtcgccttcctggtgcca
acgactgtcttagcccagcaacactatgaaaccatgctagagcgctttaaggactatccc
tttactattgacttattgagccgctttcggagcccggccgaacaaaagcatgtcattaag
ggcttaaaagagggcagcgtccaattagtgatcggtacccaccgactcctatccaaggat
attaagttcttagatctgggtttattggttgttgatgaggaacaacgctttggcgttaag
gccaaggagagattaaaggccttgcgaaaaaatgtcgatgtccttaccctgacggcaacg
ccgatccctcgtaccttgaatatgtccatgatgggggttagggacttgagtgtgattgaa
acgccaccagctaaccgttttccggtacagacctatgtcatggaacaaaactatggagcg
atccgggatgccattgaacgtgaattagcccgcaatggtcaagtcttttacctctttaat
aatgtgcaaaatatccaagaaaaagctaacttcattgaggaattagtcccccaagcccgg
gtagccattgcccatggtcagatgcatgccaatcaattagaggaagtcttaatggatttc
ttggccggagatgacgatgtcttagtcactaccaccatcattgaaaccgggattgatatg
cctaatgtcaatactctcttggtggaggacgcagaccggatgggcctatcgaccctctac
caacttcggggacgggtaggccgatccaaccgggtggcttatgcttactttatgtaccgg
cctgacaaggccctcaatgaggccagcgaaaaacggctgaccgccctcgaagactttact
gaattaggggcagggttcaaaatcgccatgcgcgacctctccattcgtggagccggcaac
ctcctggggcaagaacagcacggttttgtcaattcggtgggttatgacctctttcaacag
atgctggatgaagccatccgtaagaagcaaggcaaggcagctaagcggcctcagtcaccg
acagaaattgaattgcacattgacgcctatattccttcagaatatatccaggacgaaaat
caaaaggtggaaatctacaaacgcatcaacctgctggaggatgtcgatgccatgtgggac
ttggatgacgaattattggaccgctttggtgagcctccggtagaagttcaatggctctta
gcagtcggggcgatgaagtcctatgctactgcaataggggtagaaaaaatcacgcgtaag
gggaaggcgattgagcaggtctttaccaagcaacaagatcctagccaattgactccgctc
attttccaagccttagaagatatccccatgaaattacaaatcaaaatggctaatgatcaa
ttagtcatgcagttaaacactaaagacctctcaactgatcagtggttagactatctcctc
caattcctaacccagctcagtaaggatttaaaggcggattctgaccaagtggaaggggag
gactag
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integrated database retrieval system
