Aureibacter tunicatorum: AUTU_06850
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Entry
AUTU_06850 CDS
T09744
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
atk
Aureibacter tunicatorum
Pathway
atk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUTU_06850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atk03019
]
AUTU_06850
03400 DNA repair and recombination proteins [BR:
atk03400
]
AUTU_06850
Enzymes [BR:
atk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AUTU_06850
Messenger RNA biogenesis [BR:
atk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AUTU_06850
DNA repair and recombination proteins [BR:
atk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AUTU_06850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
RecQ-1-like_HTH
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HTH_40
DUF6806
HHH
Motif
Other DBs
NCBI-ProteinID:
BDD03202
LinkDB
All DBs
Position
complement(802235..804424)
Genome browser
AA seq
729 aa
AA seq
DB search
MAHSSLENIDQLSQKLKDIFGYGHFRGNQEAIIKNILDKKNTFVIMPTGAGKSLCYQLPA
IMSEGTALVISPLIALMKNQVDQMNALGINAKVLNSTLSKSELNKVRQEVAKGDTKLLYV
APESLTKEENIDFLQKVNISLAAIDEAHCISEWGHDFRPEYRKIKSILGCLGDMPIVALT
ATATPKVQLDIQRNLHMEDADVFKSSFNRKNLFYEVRPKKNIKKQLLRFINEHKSEAGVI
YCLSRKKVEEISEFLTVNGIKALPYHAGMESGVRMKNQDAFLNEDADVIVATIAFGMGID
KPDVRFVVHYDTPKSLEGYYQETGRAGRDGLSAYCLMFYSYNDILKLEKFNKDKPFTERE
NAKILLEEMAAYAESAVCRTNQLMHYFGEHFEGNCGFCDNCKNPKELIEAQEMISLALKA
ISLTNEKFGINHLVNILRGSENQYVLSYNHNELDIYGQGKDISLDLWKSVFRNCILLELA
IKDIEHIGVIKLSDKGKAFLKQPHSIKIPKDHDYSCEVAEEEMDDTNTQPKAGHDTVLFD
ILKKLRKTVADQMELPPFVVFQDPSLEEMATIYPTTKEELLRINGVGNGKARKFGKYFLE
AIKKYVEENNIETATDVLMKSTVNKSKTKIFIIQQVDKKVDLEELANSRSLSFSDLVSEL
EHICYSGTKLSLDYYLDEIIDEEAQDDIFDYFMNAESDKISLALEEYGDEFTEDELRLMR
IKFLSEYAN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggcacatagctcattagaaaatattgaccaactctcccaaaagctgaaagacattttt
ggctatggacatttcagaggtaatcaagaagccatcattaagaacatacttgacaaaaaa
aatacttttgtcatcatgcctacaggggcaggcaaatcactttgctaccaattgccagcg
ataatgagcgaaggcactgctttagtgatttctccgttaatcgctcttatgaaaaatcaa
gtggaccaaatgaacgctttaggcatcaatgccaaagtgctcaactcgacacttagcaag
agcgaactaaataaagtaagacaagaagtcgctaaaggagatactaaacttttatacgtt
gctcccgagtcgcttacaaaagaagaaaatatcgactttcttcaaaaagtgaacatatcc
ttggctgcgatcgacgaagcgcactgcatctccgaatggggacatgattttcgtcccgaa
tatagaaagattaaaagcatattaggttgcttaggggatatgcctattgttgcattgaca
gctacggcaactccaaaggtccaacttgacattcaaagaaatctgcatatggaagatgcg
gatgtgtttaaatcttcctttaacagaaaaaacctcttctacgaagtaagaccgaagaaa
aatataaaaaagcaactgttaaggtttatcaacgaacataaatcggaagcaggtgtcata
tattgcttaagcagaaaaaaagtagaagaaatttcggaatttcttactgtcaacggcatc
aaagcgctgccttaccatgcgggaatggaaagcggcgtgagaatgaaaaatcaagatgct
ttccttaatgaagatgctgatgtcattgtcgcgacgatagcctttggcatgggcattgac
aagcctgacgtaagattcgttgtgcattacgacacgccaaaatccttggaaggatattat
caagaaacaggcagagcgggcagggatggcttatcagcctattgtttgatgttctacagc
tacaatgacatattgaagcttgaaaaattcaacaaggacaagcctttcacagaaagagaa
aatgccaaaatactgcttgaggaaatggctgcttacgcggagtcagctgtatgcagaacc
aaccaattgatgcattattttggtgagcatttcgaaggaaattgcggtttttgcgataac
tgcaaaaacccaaaagaactcatcgaagctcaagaaatgatatctttagcattaaaagcc
atttctctcacaaatgaaaaattcggcatcaaccatttagtcaatattcttagaggctct
gaaaatcaatatgtgcttagctacaatcataatgagttggatatttatggccaaggcaaa
gacatttcattagatttgtggaaatctgttttcagaaactgtattttgcttgaattagcg
attaaagacattgagcacattggtgttataaaactatccgacaaaggaaaagcttttcta
aaacaacctcattcaatcaagatcccaaaagaccacgattactcgtgcgaagtcgctgaa
gaagaaatggatgacaccaacacacaaccaaaagctggacatgacactgttcttttcgat
atattgaaaaagcttcgcaaaacagtcgcggatcaaatggaacttcctccatttgttgtc
tttcaagatccttcactagaagaaatggcgactatttatcctacaacaaaggaggagctg
ttgagaatcaatggtgttggaaatggaaaggccagaaaattcggaaagtactttttggaa
gctatcaaaaaatatgtcgaggaaaacaatatagaaacggccacggatgtcttgatgaaa
tccacagtcaacaaatccaagactaaaattttcatcatccaacaagtggacaaaaaagtt
gaccttgaggagcttgctaattccagaagcttatcgttttctgacttggtatcagagctg
gagcatatttgctactcaggcaccaaactcagccttgactattatctggatgaaatcata
gacgaagaagcgcaagacgatattttcgattacttcatgaatgctgaaagcgacaaaata
tcacttgcccttgaagaatatggagatgaattcacagaggatgaattaagacttatgaga
atcaagtttctttcagaatacgcaaactaa
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