Aureibacter tunicatorum: AUTU_09380
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Entry
AUTU_09380 CDS
T09744
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
atk
Aureibacter tunicatorum
Pathway
atk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUTU_09380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atk03019
]
AUTU_09380
Enzymes [BR:
atk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AUTU_09380
Messenger RNA biogenesis [BR:
atk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AUTU_09380
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BDD03455
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All DBs
Position
1120025..1121269
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AA seq
414 aa
AA seq
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MKFENYYIAPEIKKTLALKGFRRPTDIQFKSIPPILKGEDVLAIAQTGTGKTAAFAIPIL
HKLHENKTRQRREDGIKCVVMVPTRELALQITEVFKELGAYTNLNILCVHGGVEQDSQIK
RLEKGVDIMIATPGRMFDLVSQKVIRLNRVDILVLDEADHMLDLGFIKDIRDLIKFLPKK
RQTLFFSATIDQKIKDLAYSLVFKPVRIQISPKDPVSKNVNHSVMFVEMDDKRFFLERLV
KENPESKILVFVRTKVRAERVSKAMERVGIKSMTMHGGKEQSDRLDVLGQFKVGKVKLLI
ATDVSARGIDIPNVDYVVNYDLPDKDENYVHRVGRTGRGKEKGNAVSFCSSEEKEMLDQI
EVYLGKKIQVLDVEKQDYQETLDFTEDHTNDWKGVMKEIQSLEGFSKKKKNKKK
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaaaattactatatagctccggaaataaagaaaactcttgcattgaaaggc
tttaggagacctactgatatccagttcaagtctattcctcccattttgaaaggagaggat
gtgttagccattgctcagacaggaactgggaaaacagctgctttcgctattcctattttg
cataagcttcatgaaaacaaaacacgtcaaagaagagaggacggcatcaaatgtgtcgtt
atggttcctacaagagagttggcacttcagataaccgaggtttttaaggaattaggagct
tatactaatctcaatattctttgcgtacacggcggtgtagagcaagacagtcaaataaaa
agattggagaagggcgttgatattatgattgcgactcccggaagaatgtttgatcttgtg
agtcagaaagttataaggcttaatcgagtggatatattggtgcttgacgaggctgatcat
atgttggatttgggctttatcaaggatattcgagatttgataaaatttcttcccaagaaa
cgtcaaacgctttttttctcagcaactattgatcagaaaatcaaggatttggcttattcg
ctagtattcaagcccgttagaattcaaatttctcccaaagaccccgtttctaaaaatgtt
aatcactctgtgatgtttgttgaaatggatgacaaacgttttttcttggaacgtttggtt
aaggaaaatcctgagagcaaaattctggtttttgtgagaacaaaagtacgagcagagcga
gttagcaaagccatggagagggttggaatcaagagtatgacaatgcacggaggcaaggaa
caatccgatagacttgatgtgcttggtcagtttaaggttgggaaggtaaaattgcttatt
gctactgatgtaagtgctagagggattgatattccaaatgtggactacgttgttaattat
gatttgccagataaggatgaaaattatgtgcatagagttgggcgtacaggacgtgggaaa
gaaaagggaaatgcagtgtctttttgcagcagcgaagagaaagagatgttagatcaaata
gaggtttacttgggcaaaaagattcaagttttggatgtggaaaaacaggattatcaagag
actttggattttacagaagaccacactaacgactggaaaggtgtgatgaaagaaatccag
tcattggaaggcttttcgaagaaaaagaaaaataagaaaaaataa
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