Aureibacter tunicatorum: AUTU_38760
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Entry
AUTU_38760 CDS
T09744
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
atk
Aureibacter tunicatorum
Pathway
atk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUTU_38760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atk03019
]
AUTU_38760
03400 DNA repair and recombination proteins [BR:
atk03400
]
AUTU_38760
Enzymes [BR:
atk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AUTU_38760
Messenger RNA biogenesis [BR:
atk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AUTU_38760
DNA repair and recombination proteins [BR:
atk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AUTU_38760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
GARS_N
Motif
Other DBs
NCBI-ProteinID:
BDD06393
LinkDB
All DBs
Position
4672997..4675129
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AA seq
710 aa
AA seq
DB search
MSTTNALSLLKKYFGYDNFRLEQEKVIHSLLTGNDVLAIMPTGGGKSICYQIPALMHTGV
AIVVSPLIALMRDQVESLKRNGIPSAYINSTMSSEEMLSVEKSCEQSAIKILYVSPEKLL
TASFFDFLKKIEISFFAIDEAHCVSFWGHDFRPEYKKLGFLKKAYPNKPIIALTATADKL
TRQDICKQLSIPEANVYISSFDRANLNLNVYPAQKRIQKINEFIQLRSDQAGIIYCLSRK
STEQVAEKLRAKGISAKAYHAKLSADERGSVQDDFIRDKIQVVCATIAFGMGIDKPNVRW
VIHYNLPKNIESYYQEIGRAGRDGLPATCLLFYTLSDVILQKSMLSDLPMERRELQEAKL
DRLRQFSEANICRRKILLNYFGEHLTENCQNCDVCQNPPTSFDGTILSQKALSAIVRGKE
SLQLGVLVDVLRGSKNQYILQRGFDQIKTFGAGKDISNNDWVNYIQQMLNLGLVDIAYDE
HHFLKLTALSWKVLKGEMQVDLYKHVDKPVDKKNSRDIERDVLSETLLEKLRKLRTQIAD
SSNIPPYIVFSDATLLQMSIEYPLYERELKKISGVGEHKLQQYGDVFLKEIRSFVMEVAT
HVKSRKIGTQKVTFSFLTEGLSPEDIAVKRTLNQVTIYSHMAELFKKGYPIDLKRYVNDI
DLERVSIALDKIGWDKGQKPLYDYLNGEVPYYKIRLCEALISKNEQVSQG
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaccaatgcactcagcctgctaaaaaaatactttggatacgataattttcga
cttgagcaagagaaagtcatccattcattattaacaggaaatgacgtattggcgattatg
cctacgggaggcggtaaatctatctgctaccaaattccagctctaatgcatacgggtgtt
gccatagtggtgtctcctctgattgctttgatgagagatcaggtggaaagcttgaaaaga
aacggtattccttcagcttatatcaatagcaccatgtcatcggaggaaatgcttagcgtc
gaaaaaagttgcgagcaatccgctataaaaatattgtacgtctctccagagaaattgcta
acagcatcattctttgatttcctgaaaaaaattgagatcagctttttcgcaattgatgaa
gcgcactgcgtatccttttggggccacgactttaggccagaatacaaaaagcttggattt
cttaaaaaagcgtatcctaacaagcctattatagctttgacagccacggccgacaagcta
actcgacaagatatttgcaagcaattaagcattccagaggcaaatgtatacatatcctca
tttgatagagccaacctgaatttaaacgtttatccagctcaaaaacgaattcaaaagatc
aacgaattcatacaactaagatctgatcaagcgggaattatttattgcttaagcagaaag
tcaaccgaacaagtggcagaaaaactcagagccaaaggcatctctgccaaagcatatcat
gcaaaactttccgctgatgaaagaggcagtgttcaagacgatttcatcagagacaaaatc
caagttgtatgcgcgactatcgcctttggaatgggtatagacaagcccaatgttcgttgg
gttattcattacaatttgcccaaaaatatagaaagctattatcaggaaataggaagagcg
ggaagagacgggttgcctgcaacatgtcttttgttttatacgctttcagatgttattctg
caaaagtccatgctctccgacttgccaatggaaagaagagaactacaggaagcgaaactg
gatagattaaggcagttctccgaggccaatatttgcagaagaaaaattctactcaactac
ttcggcgaacatttgactgaaaattgccaaaactgcgatgtatgccaaaatccgccaacc
tcatttgatggaactattcttagccaaaaagcactttcagcgattgtcagaggaaaggaa
agtctccaattgggcgtattagtggatgtgttaagaggttcaaaaaaccaatacatactc
caaagaggctttgatcagatcaaaacctttggagccggcaaagacatcagcaataatgac
tgggtcaattatattcagcaaatgttgaatttaggccttgtggacatagcatatgacgaa
catcattttcttaaactaacagcgctaagttggaaagttttaaaaggagaaatgcaagtc
gacttatacaaacatgttgacaagccagtagacaaaaagaactccagagacatagagcga
gatgtattgtccgaaacgcttttggaaaaactgcgaaaattaagaacccaaatagcggac
agcagcaacatacctccatacattgtattcagcgatgcaactttgctccagatgagcatc
gaatacccattatacgaaagggaactgaagaaaatctcaggagtaggagagcataagctt
caacagtatggagatgtctttctcaaagaaattcgatcatttgtcatggaagttgccaca
cacgtaaaatcgcgaaaaatcggcactcaaaaagtcacattttcattcttaaccgaaggc
ctaagccctgaagacatcgcagtcaaaagaacgttgaatcaagtgaccatttactctcat
atggctgaactcttcaagaaaggctatcctatcgacttaaaacgctatgtaaatgacatc
gacttggaaagggtttcaatcgcattggataaaataggttgggataaaggccaaaaacct
ctttacgattatctgaatggagaagtcccgtattataaaattcgtctttgcgaagctcta
atctcaaaaaacgagcaggtaagtcaagggtaa
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