Actinocatenispora thailandica: Athai_40070
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Entry
Athai_40070 CDS
T07045
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
atl
Actinocatenispora thailandica
Brite
KEGG Orthology (KO) [BR:
atl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
atl03016
]
Athai_40070
Enzymes [BR:
atl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Athai_40070
Transfer RNA biogenesis [BR:
atl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Athai_40070
Prokaryotic type
tRNA splicing ligases
Athai_40070
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
GARP
Motif
Other DBs
NCBI-ProteinID:
BCJ36504
UniProt:
A0A7R7DRF2
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All DBs
Position
4437796..4438983
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AA seq
395 aa
AA seq
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MSYSLLPGTAAPVRMWTDPSTVDGDALRQLRNIGSLPWVHGIAVMPDVHLGKGATVGSVI
AMRQAVAPAAVGVDIGCGMSAVRTSLTAAQLPDDLGSLRSAIEAVVPVGFAAHDDPVDPR
RLWGVKTAGWAEFWHRFGGLHQGVRHRQVRAMKQLGTLGGGNHFCEVCVDTSDSVWVLLH
SGSRNIGKELAERHMAVARKLPHNADLPDRDLAVFVAGTPEMAAYRRDLYWAQEYARRNR
ELMLALVSGVLRAELPGIRFDEPISCHHNYVAEETYDGVELLVTRKGAIRAGRGELGIIP
GSMGTGSYLVRGLGNTDAFVSASHGAGRRMSRTKAKQIYREADLAAQTAGIECRKDAGVV
DEIPAAYKDLDQVMAQQSDLVEVVQQLRQVICIKG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtactcgttgctgcccggcaccgccgcgccggtgcggatgtggaccgatccctcc
actgtggacggcgatgcgctgcggcagctgcgcaacatcggttcgctgccctgggtgcac
gggatcgcggtgatgccggacgtgcacctgggcaagggcgcgacggtcggttcggtgatc
gcgatgcggcaggcggtcgcgccggccgcggtcggcgtcgacatcggctgcggcatgtcc
gcggtccgcacctcgctgaccgccgcgcagctgccggacgatctcggttcgctgcggtcg
gcgatcgaggcggtcgtgccggtcggcttcgccgcgcacgacgacccggtcgacccgcgt
cgcctgtggggcgtcaagaccgcgggctgggccgagttctggcaccggttcgggggtctg
caccagggcgtccggcaccgccaggtacgggcgatgaagcagctcggcacgctcggcggc
ggcaaccacttttgcgaggtttgcgtcgatacatcggattcggtgtgggtgctgttgcac
tccggatcccgcaacatcggcaaggaactggccgagcggcacatggcggtggcccgcaag
ctgccgcacaatgccgacctgcccgaccgggacctcgcggtcttcgtcgccggcacgccg
gagatggccgcctaccgccgcgacctgtactgggcgcaggagtacgcccggcgcaaccgg
gagctgatgctcgcgctggtgtccggcgtgctgcgggccgagctgcccggcatccggttc
gacgagccgatctcctgtcaccacaactacgtggccgaggagacgtacgacggggtggag
ctgctggtgacccgcaagggcgcgatccgcgccggccgcggtgagctcggcatcatcccc
ggctcgatgggcaccggctcgtacctggttcgcggcctgggcaacaccgacgcgttcgtg
tccgcgtcgcacggcgccgggcggcgaatgagccgcaccaaggcgaagcagatctaccgg
gaggcggacctcgccgcccagaccgcgggtatcgagtgccgcaaggatgcgggtgtggtc
gacgagatcccggccgcgtacaaggatctggatcaggtgatggcgcagcagtcggatctg
gtcgaggtggtccagcagctgcgccaggtcatctgcatcaagggctga
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